Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09625 and ABZR87_RS09630 are separated by 36 nucleotides ABZR87_RS09630 and ABZR87_RS09635 are separated by 30 nucleotides ABZR87_RS09635 and ABZR87_RS09640 overlap by 4 nucleotides
ABZR87_RS09625: ABZR87_RS09625 - CobD/CbiB family protein, at 2,041,096 to 2,042,037
_RS09625
ABZR87_RS09630: ABZR87_RS09630 - hypothetical protein, at 2,042,074 to 2,042,388
_RS09630
ABZR87_RS09635: ABZR87_RS09635 - ribosome small subunit-dependent GTPase A, at 2,042,419 to 2,043,366
_RS09635
ABZR87_RS09640: ABZR87_RS09640 - M48 family metallopeptidase, at 2,043,363 to 2,044,622
_RS09640
Position (kb)
2042
2043 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2041.112 kb on + strand at 2041.112 kb on + strand at 2041.113 kb on - strand at 2041.113 kb on - strand at 2041.168 kb on + strand at 2041.168 kb on + strand at 2041.294 kb on + strand, within ABZR87_RS09625 at 2041.295 kb on - strand, within ABZR87_RS09625 at 2041.351 kb on + strand, within ABZR87_RS09625 at 2041.351 kb on + strand, within ABZR87_RS09625 at 2041.352 kb on - strand, within ABZR87_RS09625 at 2041.352 kb on - strand, within ABZR87_RS09625 at 2041.352 kb on - strand, within ABZR87_RS09625 at 2041.352 kb on - strand, within ABZR87_RS09625 at 2041.384 kb on + strand, within ABZR87_RS09625 at 2041.384 kb on + strand, within ABZR87_RS09625 at 2041.384 kb on + strand, within ABZR87_RS09625 at 2041.384 kb on + strand, within ABZR87_RS09625 at 2041.385 kb on - strand, within ABZR87_RS09625 at 2041.385 kb on - strand, within ABZR87_RS09625 at 2041.385 kb on - strand, within ABZR87_RS09625 at 2041.612 kb on + strand, within ABZR87_RS09625 at 2041.613 kb on - strand, within ABZR87_RS09625 at 2041.635 kb on + strand, within ABZR87_RS09625 at 2041.636 kb on - strand, within ABZR87_RS09625 at 2041.636 kb on - strand, within ABZR87_RS09625 at 2041.700 kb on - strand, within ABZR87_RS09625 at 2041.700 kb on - strand, within ABZR87_RS09625 at 2041.700 kb on - strand, within ABZR87_RS09625 at 2041.762 kb on + strand, within ABZR87_RS09625 at 2041.763 kb on - strand, within ABZR87_RS09625 at 2041.763 kb on - strand, within ABZR87_RS09625 at 2041.909 kb on + strand, within ABZR87_RS09625 at 2041.923 kb on - strand, within ABZR87_RS09625 at 2041.923 kb on - strand, within ABZR87_RS09625 at 2041.923 kb on - strand, within ABZR87_RS09625 at 2042.052 kb on + strand at 2042.052 kb on + strand at 2042.053 kb on - strand at 2042.147 kb on + strand, within ABZR87_RS09630 at 2042.291 kb on + strand, within ABZR87_RS09630 at 2042.291 kb on + strand, within ABZR87_RS09630 at 2042.291 kb on + strand, within ABZR87_RS09630 at 2042.292 kb on - strand, within ABZR87_RS09630 at 2042.292 kb on - strand, within ABZR87_RS09630 at 2042.292 kb on - strand, within ABZR87_RS09630 at 2042.292 kb on - strand, within ABZR87_RS09630 at 2042.406 kb on + strand at 2042.407 kb on - strand at 2042.407 kb on - strand at 2042.421 kb on - strand at 2042.421 kb on - strand at 2042.550 kb on - strand, within ABZR87_RS09635 at 2042.550 kb on - strand, within ABZR87_RS09635 at 2042.694 kb on - strand, within ABZR87_RS09635 at 2042.694 kb on - strand, within ABZR87_RS09635 at 2043.195 kb on - strand, within ABZR87_RS09635 at 2043.195 kb on - strand, within ABZR87_RS09635 at 2043.281 kb on + strand at 2043.281 kb on + strand at 2043.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 2,041,112 + +0.3 2,041,112 + +0.4 2,041,113 - +0.5 2,041,113 - +1.1 2,041,168 + -0.1 2,041,168 + +0.0 2,041,294 + ABZR87_RS09625 0.21 -0.3 2,041,295 - ABZR87_RS09625 0.21 -2.1 2,041,351 + ABZR87_RS09625 0.27 +0.5 2,041,351 + ABZR87_RS09625 0.27 -0.3 2,041,352 - ABZR87_RS09625 0.27 +0.4 2,041,352 - ABZR87_RS09625 0.27 -0.2 2,041,352 - ABZR87_RS09625 0.27 -0.6 2,041,352 - ABZR87_RS09625 0.27 -0.5 2,041,384 + ABZR87_RS09625 0.31 -0.0 2,041,384 + ABZR87_RS09625 0.31 -1.4 2,041,384 + ABZR87_RS09625 0.31 +0.3 2,041,384 + ABZR87_RS09625 0.31 +0.5 2,041,385 - ABZR87_RS09625 0.31 +0.5 2,041,385 - ABZR87_RS09625 0.31 +0.2 2,041,385 - ABZR87_RS09625 0.31 +0.4 2,041,612 + ABZR87_RS09625 0.55 -0.1 2,041,613 - ABZR87_RS09625 0.55 +0.1 2,041,635 + ABZR87_RS09625 0.57 +0.9 2,041,636 - ABZR87_RS09625 0.57 -0.5 2,041,636 - ABZR87_RS09625 0.57 +0.6 2,041,700 - ABZR87_RS09625 0.64 +0.2 2,041,700 - ABZR87_RS09625 0.64 +0.5 2,041,700 - ABZR87_RS09625 0.64 -0.0 2,041,762 + ABZR87_RS09625 0.71 +1.3 2,041,763 - ABZR87_RS09625 0.71 -0.7 2,041,763 - ABZR87_RS09625 0.71 +0.3 2,041,909 + ABZR87_RS09625 0.86 +2.0 2,041,923 - ABZR87_RS09625 0.88 -0.0 2,041,923 - ABZR87_RS09625 0.88 -0.4 2,041,923 - ABZR87_RS09625 0.88 +0.6 2,042,052 + +0.5 2,042,052 + +0.0 2,042,053 - -0.2 2,042,147 + ABZR87_RS09630 0.23 +0.1 2,042,291 + ABZR87_RS09630 0.69 -1.1 2,042,291 + ABZR87_RS09630 0.69 -0.2 2,042,291 + ABZR87_RS09630 0.69 -0.3 2,042,292 - ABZR87_RS09630 0.69 +0.5 2,042,292 - ABZR87_RS09630 0.69 -0.0 2,042,292 - ABZR87_RS09630 0.69 -0.7 2,042,292 - ABZR87_RS09630 0.69 -1.1 2,042,406 + -0.1 2,042,407 - -0.3 2,042,407 - +1.0 2,042,421 - -0.1 2,042,421 - +0.2 2,042,550 - ABZR87_RS09635 0.14 -0.9 2,042,550 - ABZR87_RS09635 0.14 -1.9 2,042,694 - ABZR87_RS09635 0.29 -0.7 2,042,694 - ABZR87_RS09635 0.29 -1.4 2,043,195 - ABZR87_RS09635 0.82 -0.7 2,043,195 - ABZR87_RS09635 0.82 -0.9 2,043,281 + -1.4 2,043,281 + -0.4 2,043,282 - +0.2
Or see this region's nucleotide sequence