Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08210

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08200 and ABZR87_RS08205 are separated by 25 nucleotidesABZR87_RS08205 and ABZR87_RS08210 are separated by 230 nucleotidesABZR87_RS08210 and ABZR87_RS08215 are separated by 105 nucleotidesABZR87_RS08215 and ABZR87_RS08220 are separated by 87 nucleotides ABZR87_RS08200: ABZR87_RS08200 - HD-GYP domain-containing protein, at 1,743,977 to 1,745,191 _RS08200 ABZR87_RS08205: ABZR87_RS08205 - hypothetical protein, at 1,745,217 to 1,745,375 _RS08205 ABZR87_RS08210: ABZR87_RS08210 - DUF6685 family protein, at 1,745,606 to 1,746,592 _RS08210 ABZR87_RS08215: ABZR87_RS08215 - hypothetical protein, at 1,746,698 to 1,747,114 _RS08215 ABZR87_RS08220: ABZR87_RS08220 - TonB-dependent receptor, at 1,747,202 to 1,749,385 _RS08220 Position (kb) 1745 1746 1747Strain fitness (log2 ratio) -2 -1 0 1 2at 1744.820 kb on + strand, within ABZR87_RS08200at 1744.820 kb on + strand, within ABZR87_RS08200at 1744.821 kb on - strand, within ABZR87_RS08200at 1744.821 kb on - strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.884 kb on - strand, within ABZR87_RS08200at 1744.884 kb on - strand, within ABZR87_RS08200at 1744.884 kb on - strand, within ABZR87_RS08200at 1744.884 kb on - strand, within ABZR87_RS08200at 1744.936 kb on + strand, within ABZR87_RS08200at 1744.936 kb on + strand, within ABZR87_RS08200at 1744.937 kb on - strand, within ABZR87_RS08200at 1744.937 kb on - strand, within ABZR87_RS08200at 1744.955 kb on + strand, within ABZR87_RS08200at 1744.955 kb on + strand, within ABZR87_RS08200at 1744.955 kb on + strand, within ABZR87_RS08200at 1744.955 kb on + strand, within ABZR87_RS08200at 1744.956 kb on - strand, within ABZR87_RS08200at 1744.956 kb on - strand, within ABZR87_RS08200at 1745.054 kb on + strand, within ABZR87_RS08200at 1745.054 kb on + strand, within ABZR87_RS08200at 1745.343 kb on - strand, within ABZR87_RS08205at 1745.436 kb on + strandat 1745.436 kb on + strandat 1745.437 kb on - strandat 1745.496 kb on - strandat 1745.505 kb on + strandat 1745.506 kb on - strandat 1745.506 kb on - strandat 1745.526 kb on + strandat 1745.526 kb on + strandat 1745.527 kb on - strandat 1745.622 kb on + strandat 1745.622 kb on + strandat 1745.622 kb on + strandat 1745.622 kb on + strandat 1745.622 kb on + strandat 1745.622 kb on + strandat 1745.623 kb on - strandat 1745.623 kb on - strandat 1745.623 kb on - strandat 1745.623 kb on - strandat 1745.623 kb on - strandat 1745.623 kb on - strandat 1745.623 kb on - strandat 1745.731 kb on + strand, within ABZR87_RS08210at 1745.731 kb on + strand, within ABZR87_RS08210at 1745.731 kb on + strand, within ABZR87_RS08210at 1745.955 kb on + strand, within ABZR87_RS08210at 1746.035 kb on + strand, within ABZR87_RS08210at 1746.065 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.093 kb on - strand, within ABZR87_RS08210at 1746.093 kb on - strand, within ABZR87_RS08210at 1746.093 kb on - strand, within ABZR87_RS08210at 1746.145 kb on + strand, within ABZR87_RS08210at 1746.230 kb on + strand, within ABZR87_RS08210at 1746.230 kb on + strand, within ABZR87_RS08210at 1746.230 kb on + strand, within ABZR87_RS08210at 1746.230 kb on + strand, within ABZR87_RS08210at 1746.230 kb on + strand, within ABZR87_RS08210at 1746.230 kb on + strand, within ABZR87_RS08210at 1746.231 kb on - strand, within ABZR87_RS08210at 1746.231 kb on - strand, within ABZR87_RS08210at 1746.231 kb on - strand, within ABZR87_RS08210at 1746.231 kb on - strand, within ABZR87_RS08210at 1746.429 kb on - strand, within ABZR87_RS08210at 1746.590 kb on + strandat 1746.590 kb on + strandat 1746.591 kb on - strandat 1746.591 kb on - strandat 1746.593 kb on + strandat 1746.593 kb on + strandat 1746.593 kb on + strandat 1746.593 kb on + strandat 1746.593 kb on + strandat 1746.593 kb on + strandat 1746.593 kb on + strandat 1746.594 kb on - strandat 1746.594 kb on - strandat 1746.594 kb on - strandat 1746.594 kb on - strandat 1746.594 kb on - strandat 1746.604 kb on + strandat 1746.605 kb on - strandat 1746.709 kb on + strandat 1746.710 kb on - strandat 1746.710 kb on - strandat 1746.710 kb on - strandat 1746.710 kb on - strandat 1747.171 kb on + strandat 1747.171 kb on + strandat 1747.172 kb on - strandat 1747.433 kb on + strand, within ABZR87_RS08220at 1747.433 kb on + strand, within ABZR87_RS08220at 1747.433 kb on + strand, within ABZR87_RS08220at 1747.434 kb on - strand, within ABZR87_RS08220at 1747.434 kb on - strand, within ABZR87_RS08220at 1747.532 kb on + strand, within ABZR87_RS08220at 1747.533 kb on - strand, within ABZR87_RS08220at 1747.574 kb on + strand, within ABZR87_RS08220at 1747.575 kb on - strand, within ABZR87_RS08220

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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1,744,820 + ABZR87_RS08200 0.69 +0.8
1,744,820 + ABZR87_RS08200 0.69 -1.6
1,744,821 - ABZR87_RS08200 0.69 +0.7
1,744,821 - ABZR87_RS08200 0.69 +0.5
1,744,883 + ABZR87_RS08200 0.75 -2.5
1,744,883 + ABZR87_RS08200 0.75 -0.7
1,744,883 + ABZR87_RS08200 0.75 -0.9
1,744,883 + ABZR87_RS08200 0.75 +1.0
1,744,883 + ABZR87_RS08200 0.75 -0.7
1,744,883 + ABZR87_RS08200 0.75 +0.3
1,744,883 + ABZR87_RS08200 0.75 +0.3
1,744,883 + ABZR87_RS08200 0.75 -0.1
1,744,884 - ABZR87_RS08200 0.75 -0.2
1,744,884 - ABZR87_RS08200 0.75 -0.5
1,744,884 - ABZR87_RS08200 0.75 +0.1
1,744,884 - ABZR87_RS08200 0.75 -0.8
1,744,936 + ABZR87_RS08200 0.79 +0.5
1,744,936 + ABZR87_RS08200 0.79 -0.6
1,744,937 - ABZR87_RS08200 0.79 -0.2
1,744,937 - ABZR87_RS08200 0.79 +0.1
1,744,955 + ABZR87_RS08200 0.80 -0.5
1,744,955 + ABZR87_RS08200 0.80 +0.3
1,744,955 + ABZR87_RS08200 0.80 -0.4
1,744,955 + ABZR87_RS08200 0.80 -0.4
1,744,956 - ABZR87_RS08200 0.81 +0.1
1,744,956 - ABZR87_RS08200 0.81 -0.0
1,745,054 + ABZR87_RS08200 0.89 +0.1
1,745,054 + ABZR87_RS08200 0.89 -0.4
1,745,343 - ABZR87_RS08205 0.79 +0.0
1,745,436 + +0.5
1,745,436 + -0.2
1,745,437 - -0.2
1,745,496 - -2.6
1,745,505 + +2.4
1,745,506 - +0.2
1,745,506 - -0.2
1,745,526 + +1.0
1,745,526 + -0.3
1,745,527 - -0.6
1,745,622 + -0.5
1,745,622 + -0.2
1,745,622 + +0.8
1,745,622 + +0.7
1,745,622 + -1.1
1,745,622 + +0.2
1,745,623 - +0.0
1,745,623 - -0.1
1,745,623 - +0.7
1,745,623 - +0.4
1,745,623 - -0.1
1,745,623 - +0.5
1,745,623 - +0.5
1,745,731 + ABZR87_RS08210 0.13 -0.1
1,745,731 + ABZR87_RS08210 0.13 +0.0
1,745,731 + ABZR87_RS08210 0.13 -0.2
1,745,955 + ABZR87_RS08210 0.35 +1.7
1,746,035 + ABZR87_RS08210 0.43 +1.1
1,746,065 + ABZR87_RS08210 0.47 +2.2
1,746,092 + ABZR87_RS08210 0.49 -0.4
1,746,092 + ABZR87_RS08210 0.49 +0.2
1,746,092 + ABZR87_RS08210 0.49 +0.5
1,746,092 + ABZR87_RS08210 0.49 +0.4
1,746,092 + ABZR87_RS08210 0.49 +1.3
1,746,092 + ABZR87_RS08210 0.49 +0.8
1,746,092 + ABZR87_RS08210 0.49 +0.6
1,746,093 - ABZR87_RS08210 0.49 +0.7
1,746,093 - ABZR87_RS08210 0.49 -1.2
1,746,093 - ABZR87_RS08210 0.49 -0.4
1,746,145 + ABZR87_RS08210 0.55 +1.1
1,746,230 + ABZR87_RS08210 0.63 -1.3
1,746,230 + ABZR87_RS08210 0.63 -0.0
1,746,230 + ABZR87_RS08210 0.63 +1.1
1,746,230 + ABZR87_RS08210 0.63 +0.9
1,746,230 + ABZR87_RS08210 0.63 -0.6
1,746,230 + ABZR87_RS08210 0.63 +0.6
1,746,231 - ABZR87_RS08210 0.63 +0.2
1,746,231 - ABZR87_RS08210 0.63 -0.1
1,746,231 - ABZR87_RS08210 0.63 +0.5
1,746,231 - ABZR87_RS08210 0.63 -0.6
1,746,429 - ABZR87_RS08210 0.83 -0.2
1,746,590 + -0.4
1,746,590 + +0.8
1,746,591 - -1.3
1,746,591 - -1.4
1,746,593 + -0.1
1,746,593 + -0.5
1,746,593 + +0.6
1,746,593 + -0.1
1,746,593 + -0.4
1,746,593 + -1.0
1,746,593 + +0.2
1,746,594 - +0.3
1,746,594 - -0.9
1,746,594 - -0.1
1,746,594 - +0.1
1,746,594 - -0.4
1,746,604 + +0.7
1,746,605 - -0.3
1,746,709 + -0.2
1,746,710 - -0.3
1,746,710 - +0.7
1,746,710 - -0.9
1,746,710 - +2.4
1,747,171 + +0.1
1,747,171 + +0.3
1,747,172 - +0.2
1,747,433 + ABZR87_RS08220 0.11 -1.0
1,747,433 + ABZR87_RS08220 0.11 +0.1
1,747,433 + ABZR87_RS08220 0.11 +0.2
1,747,434 - ABZR87_RS08220 0.11 +0.4
1,747,434 - ABZR87_RS08220 0.11 +0.3
1,747,532 + ABZR87_RS08220 0.15 +0.4
1,747,533 - ABZR87_RS08220 0.15 +1.4
1,747,574 + ABZR87_RS08220 0.17 -0.2
1,747,575 - ABZR87_RS08220 0.17 -0.4

Or see this region's nucleotide sequence