Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07730 and ABZR87_RS07735 are separated by 11 nucleotides ABZR87_RS07735 and ABZR87_RS07740 are separated by 31 nucleotides ABZR87_RS07740 and ABZR87_RS07745 are separated by 86 nucleotides ABZR87_RS07745 and ABZR87_RS07750 overlap by 4 nucleotides
ABZR87_RS07730: ABZR87_RS07730 - lysophospholipid acyltransferase family protein, at 1,638,689 to 1,639,441
_RS07730
ABZR87_RS07735: ABZR87_RS07735 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 1,639,453 to 1,640,031
_RS07735
ABZR87_RS07740: ABZR87_RS07740 - glycine--tRNA ligase subunit beta, at 1,640,063 to 1,642,156
_RS07740
ABZR87_RS07745: ABZR87_RS07745 - hypothetical protein, at 1,642,243 to 1,642,902
_RS07745
ABZR87_RS07750: ABZR87_RS07750 - glycine--tRNA ligase subunit alpha, at 1,642,899 to 1,643,885
_RS07750
Position (kb)
1640
1641
1642
1643 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1639.109 kb on + strand, within ABZR87_RS07730 at 1639.109 kb on + strand, within ABZR87_RS07730 at 1639.113 kb on + strand, within ABZR87_RS07730 at 1639.113 kb on + strand, within ABZR87_RS07730 at 1639.113 kb on + strand, within ABZR87_RS07730 at 1639.113 kb on + strand, within ABZR87_RS07730 at 1639.114 kb on - strand, within ABZR87_RS07730 at 1639.133 kb on + strand, within ABZR87_RS07730 at 1639.134 kb on - strand, within ABZR87_RS07730 at 1639.260 kb on + strand, within ABZR87_RS07730 at 1639.260 kb on + strand, within ABZR87_RS07730 at 1639.260 kb on + strand, within ABZR87_RS07730 at 1639.261 kb on - strand, within ABZR87_RS07730 at 1639.417 kb on - strand at 1639.589 kb on - strand, within ABZR87_RS07735 at 1639.785 kb on - strand, within ABZR87_RS07735 at 1639.802 kb on + strand, within ABZR87_RS07735 at 1639.802 kb on + strand, within ABZR87_RS07735 at 1639.802 kb on + strand, within ABZR87_RS07735 at 1639.802 kb on + strand, within ABZR87_RS07735 at 1639.803 kb on - strand, within ABZR87_RS07735 at 1639.803 kb on - strand, within ABZR87_RS07735 at 1639.803 kb on - strand, within ABZR87_RS07735 at 1642.219 kb on - strand at 1642.434 kb on - strand, within ABZR87_RS07745 at 1642.434 kb on - strand, within ABZR87_RS07745 at 1642.434 kb on - strand, within ABZR87_RS07745 at 1642.434 kb on - strand, within ABZR87_RS07745 at 1642.434 kb on - strand, within ABZR87_RS07745 at 1642.584 kb on - strand, within ABZR87_RS07745 at 1642.584 kb on - strand, within ABZR87_RS07745 at 1642.584 kb on - strand, within ABZR87_RS07745 at 1642.584 kb on - strand, within ABZR87_RS07745 at 1642.584 kb on - strand, within ABZR87_RS07745
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 1,639,109 + ABZR87_RS07730 0.56 +1.8 1,639,109 + ABZR87_RS07730 0.56 -1.3 1,639,113 + ABZR87_RS07730 0.56 +0.5 1,639,113 + ABZR87_RS07730 0.56 +0.3 1,639,113 + ABZR87_RS07730 0.56 -0.5 1,639,113 + ABZR87_RS07730 0.56 +0.8 1,639,114 - ABZR87_RS07730 0.56 +0.3 1,639,133 + ABZR87_RS07730 0.59 -0.3 1,639,134 - ABZR87_RS07730 0.59 +0.3 1,639,260 + ABZR87_RS07730 0.76 +0.3 1,639,260 + ABZR87_RS07730 0.76 +0.3 1,639,260 + ABZR87_RS07730 0.76 -0.2 1,639,261 - ABZR87_RS07730 0.76 -0.5 1,639,417 - +0.8 1,639,589 - ABZR87_RS07735 0.23 +0.8 1,639,785 - ABZR87_RS07735 0.57 +0.5 1,639,802 + ABZR87_RS07735 0.60 -1.2 1,639,802 + ABZR87_RS07735 0.60 -0.0 1,639,802 + ABZR87_RS07735 0.60 -2.0 1,639,802 + ABZR87_RS07735 0.60 -0.5 1,639,803 - ABZR87_RS07735 0.60 +0.3 1,639,803 - ABZR87_RS07735 0.60 -0.8 1,639,803 - ABZR87_RS07735 0.60 +0.3 1,642,219 - -0.3 1,642,434 - ABZR87_RS07745 0.29 -0.0 1,642,434 - ABZR87_RS07745 0.29 -1.1 1,642,434 - ABZR87_RS07745 0.29 -0.9 1,642,434 - ABZR87_RS07745 0.29 -0.4 1,642,434 - ABZR87_RS07745 0.29 -0.2 1,642,584 - ABZR87_RS07745 0.52 -0.3 1,642,584 - ABZR87_RS07745 0.52 +0.1 1,642,584 - ABZR87_RS07745 0.52 +0.4 1,642,584 - ABZR87_RS07745 0.52 -0.2 1,642,584 - ABZR87_RS07745 0.52 +0.6
Or see this region's nucleotide sequence