Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06860 and ABZR87_RS06865 are separated by 240 nucleotides ABZR87_RS06865 and ABZR87_RS06870 are separated by 13 nucleotides ABZR87_RS06870 and ABZR87_RS06875 are separated by 13 nucleotides
ABZR87_RS06860: ABZR87_RS06860 - diguanylate cyclase, at 1,451,755 to 1,454,673
_RS06860
ABZR87_RS06865: ABZR87_RS06865 - OsmC family protein, at 1,454,914 to 1,455,318
_RS06865
ABZR87_RS06870: ABZR87_RS06870 - pirin family protein, at 1,455,332 to 1,456,201
_RS06870
ABZR87_RS06875: ABZR87_RS06875 - DNA-binding protein YbiB, at 1,456,215 to 1,457,225
_RS06875
Position (kb)
1454
1455
1456 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1454.126 kb on + strand, within ABZR87_RS06860 at 1454.132 kb on + strand, within ABZR87_RS06860 at 1454.132 kb on + strand, within ABZR87_RS06860 at 1454.133 kb on - strand, within ABZR87_RS06860 at 1454.133 kb on - strand, within ABZR87_RS06860 at 1454.341 kb on + strand, within ABZR87_RS06860 at 1454.679 kb on + strand at 1454.679 kb on + strand at 1454.679 kb on + strand at 1454.679 kb on + strand at 1454.679 kb on + strand at 1454.679 kb on + strand at 1454.679 kb on + strand at 1454.679 kb on + strand at 1454.680 kb on - strand at 1454.680 kb on - strand at 1454.680 kb on - strand at 1454.680 kb on - strand at 1454.680 kb on - strand at 1454.687 kb on - strand at 1454.717 kb on + strand at 1454.763 kb on + strand at 1454.763 kb on + strand at 1454.764 kb on - strand at 1454.764 kb on - strand at 1454.764 kb on - strand at 1454.764 kb on - strand at 1454.873 kb on + strand at 1454.873 kb on + strand at 1454.873 kb on + strand at 1454.873 kb on + strand at 1454.874 kb on - strand at 1454.874 kb on - strand at 1454.986 kb on + strand, within ABZR87_RS06865 at 1454.986 kb on + strand, within ABZR87_RS06865 at 1454.986 kb on + strand, within ABZR87_RS06865 at 1454.986 kb on + strand, within ABZR87_RS06865 at 1454.987 kb on - strand, within ABZR87_RS06865 at 1454.987 kb on - strand, within ABZR87_RS06865 at 1454.987 kb on - strand, within ABZR87_RS06865 at 1454.987 kb on - strand, within ABZR87_RS06865 at 1454.988 kb on + strand, within ABZR87_RS06865 at 1455.041 kb on - strand, within ABZR87_RS06865 at 1455.089 kb on - strand, within ABZR87_RS06865 at 1455.089 kb on - strand, within ABZR87_RS06865 at 1455.089 kb on - strand, within ABZR87_RS06865 at 1455.089 kb on - strand, within ABZR87_RS06865 at 1455.106 kb on + strand, within ABZR87_RS06865 at 1455.106 kb on + strand, within ABZR87_RS06865 at 1455.169 kb on + strand, within ABZR87_RS06865 at 1455.169 kb on + strand, within ABZR87_RS06865 at 1455.170 kb on - strand, within ABZR87_RS06865 at 1455.530 kb on + strand, within ABZR87_RS06870 at 1455.531 kb on - strand, within ABZR87_RS06870 at 1455.531 kb on - strand, within ABZR87_RS06870 at 1455.531 kb on - strand, within ABZR87_RS06870 at 1455.531 kb on - strand, within ABZR87_RS06870 at 1455.857 kb on + strand, within ABZR87_RS06870 at 1455.857 kb on + strand, within ABZR87_RS06870 at 1455.857 kb on + strand, within ABZR87_RS06870 at 1455.857 kb on + strand, within ABZR87_RS06870 at 1455.857 kb on + strand, within ABZR87_RS06870 at 1455.857 kb on + strand, within ABZR87_RS06870 at 1455.858 kb on - strand, within ABZR87_RS06870 at 1455.858 kb on - strand, within ABZR87_RS06870 at 1455.858 kb on - strand, within ABZR87_RS06870 at 1455.858 kb on - strand, within ABZR87_RS06870 at 1455.858 kb on - strand, within ABZR87_RS06870 at 1455.858 kb on - strand, within ABZR87_RS06870 at 1455.858 kb on - strand, within ABZR87_RS06870 at 1455.926 kb on + strand, within ABZR87_RS06870 at 1456.082 kb on + strand, within ABZR87_RS06870 at 1456.082 kb on + strand, within ABZR87_RS06870 at 1456.083 kb on - strand, within ABZR87_RS06870 at 1456.083 kb on - strand, within ABZR87_RS06870 at 1456.083 kb on - strand, within ABZR87_RS06870 at 1456.199 kb on + strand at 1456.199 kb on + strand at 1456.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 1,454,126 + ABZR87_RS06860 0.81 +0.1 1,454,132 + ABZR87_RS06860 0.81 -0.4 1,454,132 + ABZR87_RS06860 0.81 -0.7 1,454,133 - ABZR87_RS06860 0.81 +0.4 1,454,133 - ABZR87_RS06860 0.81 +0.9 1,454,341 + ABZR87_RS06860 0.89 +0.8 1,454,679 + +0.1 1,454,679 + -0.9 1,454,679 + +0.0 1,454,679 + +1.1 1,454,679 + +1.2 1,454,679 + +0.2 1,454,679 + +0.1 1,454,679 + -0.7 1,454,680 - +2.5 1,454,680 - +1.6 1,454,680 - +3.5 1,454,680 - +0.5 1,454,680 - +2.2 1,454,687 - +1.8 1,454,717 + +0.1 1,454,763 + +0.1 1,454,763 + -0.4 1,454,764 - +2.0 1,454,764 - +2.4 1,454,764 - +2.7 1,454,764 - +2.1 1,454,873 + -0.1 1,454,873 + -0.8 1,454,873 + +0.5 1,454,873 + +0.0 1,454,874 - +1.8 1,454,874 - +1.4 1,454,986 + ABZR87_RS06865 0.18 +0.2 1,454,986 + ABZR87_RS06865 0.18 +0.8 1,454,986 + ABZR87_RS06865 0.18 -1.5 1,454,986 + ABZR87_RS06865 0.18 +1.2 1,454,987 - ABZR87_RS06865 0.18 +2.1 1,454,987 - ABZR87_RS06865 0.18 +1.8 1,454,987 - ABZR87_RS06865 0.18 +2.3 1,454,987 - ABZR87_RS06865 0.18 +1.8 1,454,988 + ABZR87_RS06865 0.18 -0.1 1,455,041 - ABZR87_RS06865 0.31 +2.0 1,455,089 - ABZR87_RS06865 0.43 +2.0 1,455,089 - ABZR87_RS06865 0.43 +1.8 1,455,089 - ABZR87_RS06865 0.43 +2.3 1,455,089 - ABZR87_RS06865 0.43 +0.1 1,455,106 + ABZR87_RS06865 0.47 +1.1 1,455,106 + ABZR87_RS06865 0.47 +0.1 1,455,169 + ABZR87_RS06865 0.63 +0.1 1,455,169 + ABZR87_RS06865 0.63 -0.3 1,455,170 - ABZR87_RS06865 0.63 +1.6 1,455,530 + ABZR87_RS06870 0.23 -1.3 1,455,531 - ABZR87_RS06870 0.23 +0.8 1,455,531 - ABZR87_RS06870 0.23 +0.8 1,455,531 - ABZR87_RS06870 0.23 +0.2 1,455,531 - ABZR87_RS06870 0.23 +0.8 1,455,857 + ABZR87_RS06870 0.60 +0.0 1,455,857 + ABZR87_RS06870 0.60 +0.6 1,455,857 + ABZR87_RS06870 0.60 +0.2 1,455,857 + ABZR87_RS06870 0.60 +0.2 1,455,857 + ABZR87_RS06870 0.60 -0.9 1,455,857 + ABZR87_RS06870 0.60 -0.0 1,455,858 - ABZR87_RS06870 0.60 -1.0 1,455,858 - ABZR87_RS06870 0.60 +0.4 1,455,858 - ABZR87_RS06870 0.60 +0.7 1,455,858 - ABZR87_RS06870 0.60 -0.1 1,455,858 - ABZR87_RS06870 0.60 +0.0 1,455,858 - ABZR87_RS06870 0.60 -0.6 1,455,858 - ABZR87_RS06870 0.60 +0.3 1,455,926 + ABZR87_RS06870 0.68 -0.2 1,456,082 + ABZR87_RS06870 0.86 +0.4 1,456,082 + ABZR87_RS06870 0.86 -0.2 1,456,083 - ABZR87_RS06870 0.86 -0.6 1,456,083 - ABZR87_RS06870 0.86 +0.3 1,456,083 - ABZR87_RS06870 0.86 +0.3 1,456,199 + -0.8 1,456,199 + -0.3 1,456,200 - +0.0
Or see this region's nucleotide sequence