Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06235 and ABZR87_RS06240 are separated by 12 nucleotides ABZR87_RS06240 and ABZR87_RS06245 are separated by 10 nucleotides ABZR87_RS06245 and ABZR87_RS06250 are separated by 22 nucleotides ABZR87_RS06250 and ABZR87_RS06255 are separated by 1 nucleotides
ABZR87_RS06235: ABZR87_RS06235 - MBL fold metallo-hydrolase, at 1,332,104 to 1,333,057
_RS06235
ABZR87_RS06240: ABZR87_RS06240 - DUF1289 domain-containing protein, at 1,333,070 to 1,333,336
_RS06240
ABZR87_RS06245: ABZR87_RS06245 - YbaK/EbsC family protein, at 1,333,347 to 1,333,847
_RS06245
ABZR87_RS06250: ABZR87_RS06250 - hydroxymethylglutaryl-CoA lyase, at 1,333,870 to 1,334,799
_RS06250
ABZR87_RS06255: ABZR87_RS06255 - glyoxylate/hydroxypyruvate reductase A, at 1,334,801 to 1,335,742
_RS06255
Position (kb) 1333
1334
1335 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1333.090 kb on + strand at 1333.459 kb on + strand, within ABZR87_RS06245 at 1333.459 kb on + strand, within ABZR87_RS06245 at 1333.459 kb on + strand, within ABZR87_RS06245 at 1333.535 kb on - strand, within ABZR87_RS06245 at 1333.833 kb on - strand at 1333.875 kb on + strand at 1333.876 kb on - strand at 1334.030 kb on + strand, within ABZR87_RS06250 at 1334.030 kb on + strand, within ABZR87_RS06250 at 1334.030 kb on + strand, within ABZR87_RS06250 at 1334.031 kb on - strand, within ABZR87_RS06250 at 1334.031 kb on - strand, within ABZR87_RS06250 at 1334.076 kb on - strand, within ABZR87_RS06250 at 1334.165 kb on + strand, within ABZR87_RS06250 at 1334.165 kb on + strand, within ABZR87_RS06250 at 1334.165 kb on + strand, within ABZR87_RS06250 at 1334.351 kb on + strand, within ABZR87_RS06250 at 1334.570 kb on + strand, within ABZR87_RS06250 at 1334.570 kb on + strand, within ABZR87_RS06250 at 1334.805 kb on + strand at 1335.016 kb on + strand, within ABZR87_RS06255 at 1335.391 kb on - strand, within ABZR87_RS06255 at 1335.435 kb on + strand, within ABZR87_RS06255 at 1335.436 kb on - strand, within ABZR87_RS06255 at 1335.622 kb on - strand, within ABZR87_RS06255 at 1335.622 kb on - strand, within ABZR87_RS06255 at 1335.622 kb on - strand, within ABZR87_RS06255 at 1335.622 kb on - strand, within ABZR87_RS06255 at 1335.727 kb on - strand at 1335.727 kb on - strand at 1335.774 kb on - strand at 1335.789 kb on + strand at 1335.790 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 1,333,090 + +0.3 1,333,459 + ABZR87_RS06245 0.22 -0.8 1,333,459 + ABZR87_RS06245 0.22 +0.2 1,333,459 + ABZR87_RS06245 0.22 -0.6 1,333,535 - ABZR87_RS06245 0.38 +0.5 1,333,833 - -0.7 1,333,875 + -2.1 1,333,876 - +0.1 1,334,030 + ABZR87_RS06250 0.17 -1.9 1,334,030 + ABZR87_RS06250 0.17 +0.2 1,334,030 + ABZR87_RS06250 0.17 +0.4 1,334,031 - ABZR87_RS06250 0.17 +0.4 1,334,031 - ABZR87_RS06250 0.17 -2.2 1,334,076 - ABZR87_RS06250 0.22 -2.0 1,334,165 + ABZR87_RS06250 0.32 -0.7 1,334,165 + ABZR87_RS06250 0.32 +2.0 1,334,165 + ABZR87_RS06250 0.32 -0.4 1,334,351 + ABZR87_RS06250 0.52 -1.1 1,334,570 + ABZR87_RS06250 0.75 -2.5 1,334,570 + ABZR87_RS06250 0.75 -1.1 1,334,805 + +0.2 1,335,016 + ABZR87_RS06255 0.23 +1.3 1,335,391 - ABZR87_RS06255 0.63 +0.7 1,335,435 + ABZR87_RS06255 0.67 +0.1 1,335,436 - ABZR87_RS06255 0.67 -0.6 1,335,622 - ABZR87_RS06255 0.87 +0.4 1,335,622 - ABZR87_RS06255 0.87 +0.2 1,335,622 - ABZR87_RS06255 0.87 -0.1 1,335,622 - ABZR87_RS06255 0.87 -0.3 1,335,727 - -0.7 1,335,727 - -0.9 1,335,774 - -0.4 1,335,789 + +0.1 1,335,790 - -1.4
Or see this region's nucleotide sequence