Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04410 and ABZR87_RS04415 are separated by 189 nucleotides ABZR87_RS04415 and ABZR87_RS04420 are separated by 75 nucleotides ABZR87_RS04420 and ABZR87_RS04425 are separated by 150 nucleotides ABZR87_RS04425 and ABZR87_RS04430 are separated by 193 nucleotides
ABZR87_RS04410: ABZR87_RS04410 - chromate transporter, at 925,952 to 927,124
_RS04410
ABZR87_RS04415: ABZR87_RS04415 - hypothetical protein, at 927,314 to 927,463
_RS04415
ABZR87_RS04420: ABZR87_RS04420 - hypothetical protein, at 927,539 to 927,760
_RS04420
ABZR87_RS04425: ABZR87_RS04425 - hypothetical protein, at 927,911 to 928,216
_RS04425
ABZR87_RS04430: ABZR87_RS04430 - hypothetical protein, at 928,410 to 929,231
_RS04430
Position (kb) 927
928
929 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 927.104 kb on + strand at 927.104 kb on + strand at 927.104 kb on + strand at 927.105 kb on - strand at 927.187 kb on + strand at 927.275 kb on - strand at 927.371 kb on + strand, within ABZR87_RS04415 at 927.371 kb on + strand, within ABZR87_RS04415 at 927.372 kb on - strand, within ABZR87_RS04415 at 927.372 kb on - strand, within ABZR87_RS04415 at 927.372 kb on - strand, within ABZR87_RS04415 at 927.372 kb on - strand, within ABZR87_RS04415 at 927.372 kb on - strand, within ABZR87_RS04415 at 927.540 kb on + strand at 927.540 kb on + strand at 927.540 kb on + strand at 927.540 kb on + strand at 927.540 kb on + strand at 927.540 kb on + strand at 927.540 kb on + strand at 927.540 kb on + strand at 927.541 kb on - strand at 927.673 kb on + strand, within ABZR87_RS04420 at 927.673 kb on + strand, within ABZR87_RS04420 at 927.673 kb on + strand, within ABZR87_RS04420 at 927.673 kb on + strand, within ABZR87_RS04420 at 927.673 kb on + strand, within ABZR87_RS04420 at 927.673 kb on + strand, within ABZR87_RS04420 at 927.673 kb on + strand, within ABZR87_RS04420 at 927.674 kb on - strand, within ABZR87_RS04420 at 927.674 kb on - strand, within ABZR87_RS04420 at 927.674 kb on - strand, within ABZR87_RS04420 at 927.780 kb on + strand at 927.780 kb on + strand at 927.780 kb on + strand at 927.781 kb on - strand at 927.781 kb on - strand at 927.781 kb on - strand at 927.781 kb on - strand at 927.781 kb on - strand at 927.807 kb on - strand at 927.859 kb on + strand at 928.098 kb on + strand, within ABZR87_RS04425 at 928.098 kb on + strand, within ABZR87_RS04425 at 928.099 kb on - strand, within ABZR87_RS04425 at 928.099 kb on - strand, within ABZR87_RS04425 at 928.167 kb on + strand, within ABZR87_RS04425 at 928.167 kb on + strand, within ABZR87_RS04425 at 928.167 kb on + strand, within ABZR87_RS04425 at 928.167 kb on + strand, within ABZR87_RS04425 at 928.167 kb on + strand, within ABZR87_RS04425 at 928.167 kb on + strand, within ABZR87_RS04425 at 928.168 kb on - strand, within ABZR87_RS04425 at 928.168 kb on - strand, within ABZR87_RS04425 at 928.168 kb on - strand, within ABZR87_RS04425 at 928.168 kb on - strand, within ABZR87_RS04425 at 928.168 kb on - strand, within ABZR87_RS04425 at 928.168 kb on - strand, within ABZR87_RS04425 at 928.312 kb on + strand at 928.312 kb on + strand at 928.313 kb on - strand at 928.313 kb on - strand at 928.313 kb on - strand at 928.313 kb on - strand at 928.313 kb on - strand at 928.313 kb on - strand at 928.314 kb on + strand at 928.314 kb on + strand at 928.314 kb on + strand at 928.314 kb on + strand at 928.314 kb on + strand at 928.315 kb on - strand at 928.315 kb on - strand at 928.315 kb on - strand at 928.315 kb on - strand at 928.315 kb on - strand at 928.315 kb on - strand at 928.315 kb on - strand at 928.338 kb on - strand at 928.365 kb on + strand at 928.365 kb on + strand at 928.365 kb on + strand at 928.366 kb on - strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.445 kb on - strand at 928.445 kb on - strand at 928.445 kb on - strand at 928.445 kb on - strand at 928.459 kb on + strand at 928.460 kb on - strand at 928.471 kb on + strand at 928.471 kb on + strand at 928.471 kb on + strand at 928.471 kb on + strand at 928.472 kb on - strand at 928.573 kb on + strand, within ABZR87_RS04430 at 928.643 kb on + strand, within ABZR87_RS04430 at 928.644 kb on - strand, within ABZR87_RS04430 at 928.717 kb on + strand, within ABZR87_RS04430 at 928.718 kb on - strand, within ABZR87_RS04430 at 928.718 kb on - strand, within ABZR87_RS04430 at 928.779 kb on + strand, within ABZR87_RS04430 at 928.779 kb on + strand, within ABZR87_RS04430 at 928.780 kb on - strand, within ABZR87_RS04430 at 928.780 kb on - strand, within ABZR87_RS04430 at 928.780 kb on - strand, within ABZR87_RS04430 at 928.791 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.944 kb on - strand, within ABZR87_RS04430 at 929.015 kb on + strand, within ABZR87_RS04430 at 929.016 kb on - strand, within ABZR87_RS04430 at 929.016 kb on - strand, within ABZR87_RS04430 at 929.081 kb on - strand, within ABZR87_RS04430 at 929.081 kb on - strand, within ABZR87_RS04430 at 929.214 kb on + strand at 929.214 kb on + strand at 929.214 kb on + strand at 929.214 kb on + strand at 929.215 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 927,104 + +1.3 927,104 + -0.2 927,104 + +0.0 927,105 - +0.1 927,187 + +0.0 927,275 - +0.5 927,371 + ABZR87_RS04415 0.38 -0.1 927,371 + ABZR87_RS04415 0.38 -0.7 927,372 - ABZR87_RS04415 0.39 +0.5 927,372 - ABZR87_RS04415 0.39 -0.3 927,372 - ABZR87_RS04415 0.39 +0.5 927,372 - ABZR87_RS04415 0.39 -0.1 927,372 - ABZR87_RS04415 0.39 +0.8 927,540 + +1.1 927,540 + +1.9 927,540 + +0.0 927,540 + +0.1 927,540 + -2.0 927,540 + -1.6 927,540 + +1.0 927,540 + +2.0 927,541 - -0.4 927,673 + ABZR87_RS04420 0.60 -0.4 927,673 + ABZR87_RS04420 0.60 -0.4 927,673 + ABZR87_RS04420 0.60 -0.7 927,673 + ABZR87_RS04420 0.60 +0.6 927,673 + ABZR87_RS04420 0.60 -0.8 927,673 + ABZR87_RS04420 0.60 +0.5 927,673 + ABZR87_RS04420 0.60 -1.1 927,674 - ABZR87_RS04420 0.61 +0.0 927,674 - ABZR87_RS04420 0.61 +0.1 927,674 - ABZR87_RS04420 0.61 -1.0 927,780 + -0.1 927,780 + -1.0 927,780 + -0.1 927,781 - -0.5 927,781 - -0.9 927,781 - -0.6 927,781 - -0.3 927,781 - -1.0 927,807 - -0.2 927,859 + -1.0 928,098 + ABZR87_RS04425 0.61 -0.2 928,098 + ABZR87_RS04425 0.61 +0.8 928,099 - ABZR87_RS04425 0.61 -0.2 928,099 - ABZR87_RS04425 0.61 +2.9 928,167 + ABZR87_RS04425 0.84 +1.8 928,167 + ABZR87_RS04425 0.84 +0.3 928,167 + ABZR87_RS04425 0.84 +0.1 928,167 + ABZR87_RS04425 0.84 +0.8 928,167 + ABZR87_RS04425 0.84 +0.2 928,167 + ABZR87_RS04425 0.84 +0.5 928,168 - ABZR87_RS04425 0.84 +0.0 928,168 - ABZR87_RS04425 0.84 -0.2 928,168 - ABZR87_RS04425 0.84 -0.8 928,168 - ABZR87_RS04425 0.84 +0.5 928,168 - ABZR87_RS04425 0.84 -0.6 928,168 - ABZR87_RS04425 0.84 +0.5 928,312 + +0.1 928,312 + -0.6 928,313 - -0.6 928,313 - +1.6 928,313 - +0.5 928,313 - +0.2 928,313 - +0.8 928,313 - +0.0 928,314 + -0.2 928,314 + -2.0 928,314 + +0.5 928,314 + +0.5 928,314 + +1.4 928,315 - +0.2 928,315 - +1.2 928,315 - +1.0 928,315 - +0.3 928,315 - +0.4 928,315 - +0.4 928,315 - +0.8 928,338 - +0.6 928,365 + -0.9 928,365 + -0.8 928,365 + +0.6 928,366 - -0.2 928,444 + -0.4 928,444 + -0.0 928,444 + -0.2 928,444 + -0.0 928,444 + +0.7 928,444 + +0.4 928,444 + +1.6 928,445 - -0.5 928,445 - -0.2 928,445 - -0.1 928,445 - +0.4 928,459 + +0.5 928,460 - -0.4 928,471 + -1.4 928,471 + +0.4 928,471 + -0.7 928,471 + +1.0 928,472 - -0.3 928,573 + ABZR87_RS04430 0.20 +0.2 928,643 + ABZR87_RS04430 0.28 -1.2 928,644 - ABZR87_RS04430 0.28 +0.3 928,717 + ABZR87_RS04430 0.37 -0.1 928,718 - ABZR87_RS04430 0.37 +0.1 928,718 - ABZR87_RS04430 0.37 -0.7 928,779 + ABZR87_RS04430 0.45 -1.6 928,779 + ABZR87_RS04430 0.45 -0.0 928,780 - ABZR87_RS04430 0.45 -0.2 928,780 - ABZR87_RS04430 0.45 -1.9 928,780 - ABZR87_RS04430 0.45 -1.9 928,791 + ABZR87_RS04430 0.46 -1.3 928,813 + ABZR87_RS04430 0.49 -1.0 928,813 + ABZR87_RS04430 0.49 -0.1 928,813 + ABZR87_RS04430 0.49 -0.5 928,813 + ABZR87_RS04430 0.49 -0.8 928,813 + ABZR87_RS04430 0.49 +0.3 928,813 + ABZR87_RS04430 0.49 +0.8 928,813 + ABZR87_RS04430 0.49 -0.3 928,813 + ABZR87_RS04430 0.49 +0.3 928,814 - ABZR87_RS04430 0.49 -0.5 928,814 - ABZR87_RS04430 0.49 +0.6 928,814 - ABZR87_RS04430 0.49 +0.1 928,814 - ABZR87_RS04430 0.49 -0.3 928,814 - ABZR87_RS04430 0.49 +0.0 928,814 - ABZR87_RS04430 0.49 +0.4 928,814 - ABZR87_RS04430 0.49 +0.0 928,944 - ABZR87_RS04430 0.65 -0.4 929,015 + ABZR87_RS04430 0.74 -0.3 929,016 - ABZR87_RS04430 0.74 +0.6 929,016 - ABZR87_RS04430 0.74 -0.5 929,081 - ABZR87_RS04430 0.82 -1.9 929,081 - ABZR87_RS04430 0.82 -0.5 929,214 + -0.2 929,214 + -0.0 929,214 + -0.7 929,214 + -0.1 929,215 - +0.4
Or see this region's nucleotide sequence