Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03460

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03455 and ABZR87_RS03460 are separated by 22 nucleotidesABZR87_RS03460 and ABZR87_RS03465 are separated by 575 nucleotides ABZR87_RS03455: ABZR87_RS03455 - type II secretion system ATPase GspE, at 721,482 to 723,038 _RS03455 ABZR87_RS03460: ABZR87_RS03460 - type II secretion system inner membrane protein GspF, at 723,061 to 724,272 _RS03460 ABZR87_RS03465: ABZR87_RS03465 - pyridoxamine 5'-phosphate oxidase family protein, at 724,848 to 725,531 _RS03465 Position (kb) 723 724 725Strain fitness (log2 ratio) -2 -1 0 1at 722.113 kb on + strand, within ABZR87_RS03455at 722.113 kb on + strand, within ABZR87_RS03455at 722.213 kb on + strand, within ABZR87_RS03455at 722.316 kb on + strand, within ABZR87_RS03455at 722.316 kb on + strand, within ABZR87_RS03455at 722.316 kb on + strand, within ABZR87_RS03455at 722.317 kb on - strand, within ABZR87_RS03455at 722.382 kb on + strand, within ABZR87_RS03455at 722.382 kb on + strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.552 kb on - strand, within ABZR87_RS03455at 722.552 kb on - strand, within ABZR87_RS03455at 722.552 kb on - strand, within ABZR87_RS03455at 722.552 kb on - strand, within ABZR87_RS03455at 722.671 kb on + strand, within ABZR87_RS03455at 722.671 kb on + strand, within ABZR87_RS03455at 722.671 kb on + strand, within ABZR87_RS03455at 722.671 kb on + strand, within ABZR87_RS03455at 722.839 kb on - strand, within ABZR87_RS03455at 722.859 kb on + strand, within ABZR87_RS03455at 722.859 kb on + strand, within ABZR87_RS03455at 722.860 kb on - strand, within ABZR87_RS03455at 722.860 kb on - strand, within ABZR87_RS03455at 722.860 kb on - strand, within ABZR87_RS03455at 723.036 kb on + strandat 723.036 kb on + strandat 723.036 kb on + strandat 723.036 kb on + strandat 723.037 kb on - strandat 723.055 kb on + strandat 723.055 kb on + strandat 723.056 kb on - strandat 723.056 kb on - strandat 723.076 kb on + strandat 723.352 kb on + strand, within ABZR87_RS03460at 723.352 kb on + strand, within ABZR87_RS03460at 723.352 kb on + strand, within ABZR87_RS03460at 723.353 kb on - strand, within ABZR87_RS03460at 723.451 kb on + strand, within ABZR87_RS03460at 723.451 kb on + strand, within ABZR87_RS03460at 723.451 kb on + strand, within ABZR87_RS03460at 723.451 kb on + strand, within ABZR87_RS03460at 723.452 kb on - strand, within ABZR87_RS03460at 723.452 kb on - strand, within ABZR87_RS03460at 723.452 kb on - strand, within ABZR87_RS03460at 723.452 kb on - strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.521 kb on - strand, within ABZR87_RS03460at 723.572 kb on - strand, within ABZR87_RS03460at 723.625 kb on + strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.650 kb on + strand, within ABZR87_RS03460at 723.650 kb on + strand, within ABZR87_RS03460at 723.650 kb on + strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.797 kb on + strand, within ABZR87_RS03460at 723.798 kb on - strand, within ABZR87_RS03460at 723.798 kb on - strand, within ABZR87_RS03460at 723.860 kb on - strand, within ABZR87_RS03460at 724.246 kb on - strandat 724.254 kb on + strandat 724.255 kb on - strandat 724.255 kb on - strandat 724.255 kb on - strandat 724.596 kb on + strandat 724.906 kb on + strandat 724.906 kb on + strandat 724.906 kb on + strandat 724.906 kb on + strandat 724.907 kb on - strandat 724.907 kb on - strandat 724.907 kb on - strandat 724.907 kb on - strandat 725.141 kb on + strand, within ABZR87_RS03465at 725.142 kb on - strand, within ABZR87_RS03465at 725.142 kb on - strand, within ABZR87_RS03465at 725.142 kb on - strand, within ABZR87_RS03465at 725.147 kb on + strand, within ABZR87_RS03465at 725.148 kb on - strand, within ABZR87_RS03465at 725.197 kb on + strand, within ABZR87_RS03465at 725.197 kb on + strand, within ABZR87_RS03465at 725.215 kb on + strand, within ABZR87_RS03465at 725.215 kb on + strand, within ABZR87_RS03465at 725.215 kb on + strand, within ABZR87_RS03465at 725.216 kb on - strand, within ABZR87_RS03465

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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722,113 + ABZR87_RS03455 0.41 -2.3
722,113 + ABZR87_RS03455 0.41 -1.3
722,213 + ABZR87_RS03455 0.47 -0.7
722,316 + ABZR87_RS03455 0.54 +1.0
722,316 + ABZR87_RS03455 0.54 -0.8
722,316 + ABZR87_RS03455 0.54 +0.9
722,317 - ABZR87_RS03455 0.54 -0.6
722,382 + ABZR87_RS03455 0.58 -0.7
722,382 + ABZR87_RS03455 0.58 -0.7
722,383 - ABZR87_RS03455 0.58 +0.4
722,383 - ABZR87_RS03455 0.58 -0.6
722,383 - ABZR87_RS03455 0.58 +0.1
722,383 - ABZR87_RS03455 0.58 -1.2
722,383 - ABZR87_RS03455 0.58 -0.7
722,551 + ABZR87_RS03455 0.69 -1.7
722,551 + ABZR87_RS03455 0.69 -0.4
722,551 + ABZR87_RS03455 0.69 +0.0
722,551 + ABZR87_RS03455 0.69 -0.5
722,551 + ABZR87_RS03455 0.69 +0.3
722,552 - ABZR87_RS03455 0.69 -0.1
722,552 - ABZR87_RS03455 0.69 -1.4
722,552 - ABZR87_RS03455 0.69 -0.3
722,552 - ABZR87_RS03455 0.69 +0.1
722,671 + ABZR87_RS03455 0.76 -0.6
722,671 + ABZR87_RS03455 0.76 -0.5
722,671 + ABZR87_RS03455 0.76 -0.7
722,671 + ABZR87_RS03455 0.76 -0.8
722,839 - ABZR87_RS03455 0.87 +0.0
722,859 + ABZR87_RS03455 0.88 -2.0
722,859 + ABZR87_RS03455 0.88 -1.0
722,860 - ABZR87_RS03455 0.89 -1.4
722,860 - ABZR87_RS03455 0.89 -1.8
722,860 - ABZR87_RS03455 0.89 -0.8
723,036 + -0.2
723,036 + +0.6
723,036 + -0.2
723,036 + -0.2
723,037 - +0.2
723,055 + +0.4
723,055 + -0.5
723,056 - +0.5
723,056 - -1.3
723,076 + -1.2
723,352 + ABZR87_RS03460 0.24 -0.1
723,352 + ABZR87_RS03460 0.24 +0.6
723,352 + ABZR87_RS03460 0.24 -0.9
723,353 - ABZR87_RS03460 0.24 -0.6
723,451 + ABZR87_RS03460 0.32 -1.5
723,451 + ABZR87_RS03460 0.32 -1.0
723,451 + ABZR87_RS03460 0.32 -1.0
723,451 + ABZR87_RS03460 0.32 -0.4
723,452 - ABZR87_RS03460 0.32 -0.5
723,452 - ABZR87_RS03460 0.32 -0.9
723,452 - ABZR87_RS03460 0.32 -0.0
723,452 - ABZR87_RS03460 0.32 +0.6
723,520 + ABZR87_RS03460 0.38 -0.5
723,520 + ABZR87_RS03460 0.38 -1.4
723,520 + ABZR87_RS03460 0.38 -0.9
723,520 + ABZR87_RS03460 0.38 -1.5
723,520 + ABZR87_RS03460 0.38 +0.2
723,520 + ABZR87_RS03460 0.38 -0.4
723,521 - ABZR87_RS03460 0.38 -1.3
723,572 - ABZR87_RS03460 0.42 -1.1
723,625 + ABZR87_RS03460 0.47 -0.3
723,626 - ABZR87_RS03460 0.47 -1.0
723,626 - ABZR87_RS03460 0.47 -1.0
723,626 - ABZR87_RS03460 0.47 -1.3
723,626 - ABZR87_RS03460 0.47 -1.9
723,626 - ABZR87_RS03460 0.47 -1.1
723,650 + ABZR87_RS03460 0.49 +0.1
723,650 + ABZR87_RS03460 0.49 -0.7
723,650 + ABZR87_RS03460 0.49 -0.3
723,651 - ABZR87_RS03460 0.49 -1.0
723,651 - ABZR87_RS03460 0.49 -0.7
723,651 - ABZR87_RS03460 0.49 -0.8
723,651 - ABZR87_RS03460 0.49 -1.7
723,651 - ABZR87_RS03460 0.49 -0.4
723,651 - ABZR87_RS03460 0.49 +0.3
723,797 + ABZR87_RS03460 0.61 -1.2
723,798 - ABZR87_RS03460 0.61 -0.2
723,798 - ABZR87_RS03460 0.61 -0.4
723,860 - ABZR87_RS03460 0.66 -2.5
724,246 - +0.9
724,254 + -0.5
724,255 - +0.6
724,255 - -0.5
724,255 - -0.5
724,596 + -0.1
724,906 + +0.3
724,906 + -0.4
724,906 + -1.0
724,906 + -0.2
724,907 - +0.1
724,907 - +0.3
724,907 - -0.5
724,907 - -0.5
725,141 + ABZR87_RS03465 0.43 +1.1
725,142 - ABZR87_RS03465 0.43 +0.1
725,142 - ABZR87_RS03465 0.43 -0.6
725,142 - ABZR87_RS03465 0.43 +0.9
725,147 + ABZR87_RS03465 0.44 -0.2
725,148 - ABZR87_RS03465 0.44 +0.9
725,197 + ABZR87_RS03465 0.51 -0.6
725,197 + ABZR87_RS03465 0.51 -0.5
725,215 + ABZR87_RS03465 0.54 -0.2
725,215 + ABZR87_RS03465 0.54 -1.0
725,215 + ABZR87_RS03465 0.54 +0.1
725,216 - ABZR87_RS03465 0.54 -0.3

Or see this region's nucleotide sequence