Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03420 and ABZR87_RS03425 overlap by 20 nucleotides ABZR87_RS03425 and ABZR87_RS03430 are separated by 1 nucleotides ABZR87_RS03430 and ABZR87_RS03435 are separated by 164 nucleotides
ABZR87_RS03420: ABZR87_RS03420 - type II secretion system minor pseudopilin GspI, at 713,754 to 714,164
_RS03420
ABZR87_RS03425: ABZR87_RS03425 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 714,145 to 714,888
_RS03425
ABZR87_RS03430: ABZR87_RS03430 - type II secretion system minor pseudopilin GspK, at 714,890 to 715,969
_RS03430
ABZR87_RS03435: ABZR87_RS03435 - type II secretion system protein GspL, at 716,134 to 717,570
_RS03435
Position (kb) 714
715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 714.014 kb on + strand, within ABZR87_RS03420 at 714.162 kb on + strand at 714.162 kb on + strand at 714.162 kb on + strand at 714.162 kb on + strand at 714.162 kb on + strand at 714.162 kb on + strand at 714.163 kb on - strand at 714.163 kb on - strand at 714.163 kb on - strand at 714.334 kb on + strand, within ABZR87_RS03425 at 714.334 kb on + strand, within ABZR87_RS03425 at 714.334 kb on + strand, within ABZR87_RS03425 at 714.335 kb on - strand, within ABZR87_RS03425 at 714.335 kb on - strand, within ABZR87_RS03425 at 714.479 kb on - strand, within ABZR87_RS03425 at 714.479 kb on - strand, within ABZR87_RS03425 at 714.592 kb on + strand, within ABZR87_RS03425 at 714.592 kb on + strand, within ABZR87_RS03425 at 714.593 kb on - strand, within ABZR87_RS03425 at 714.658 kb on + strand, within ABZR87_RS03425 at 714.738 kb on + strand, within ABZR87_RS03425 at 714.738 kb on + strand, within ABZR87_RS03425 at 714.738 kb on + strand, within ABZR87_RS03425 at 714.738 kb on + strand, within ABZR87_RS03425 at 714.739 kb on - strand, within ABZR87_RS03425 at 714.739 kb on - strand, within ABZR87_RS03425 at 715.026 kb on + strand, within ABZR87_RS03430 at 715.026 kb on + strand, within ABZR87_RS03430 at 715.027 kb on - strand, within ABZR87_RS03430 at 715.244 kb on + strand, within ABZR87_RS03430 at 715.244 kb on + strand, within ABZR87_RS03430 at 715.244 kb on + strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.364 kb on + strand, within ABZR87_RS03430 at 715.365 kb on - strand, within ABZR87_RS03430 at 715.365 kb on - strand, within ABZR87_RS03430 at 715.424 kb on + strand, within ABZR87_RS03430 at 715.424 kb on + strand, within ABZR87_RS03430 at 715.424 kb on + strand, within ABZR87_RS03430 at 715.424 kb on + strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.574 kb on + strand, within ABZR87_RS03430 at 715.607 kb on + strand, within ABZR87_RS03430 at 715.607 kb on + strand, within ABZR87_RS03430 at 715.608 kb on - strand, within ABZR87_RS03430 at 715.608 kb on - strand, within ABZR87_RS03430 at 715.665 kb on + strand, within ABZR87_RS03430 at 715.665 kb on + strand, within ABZR87_RS03430 at 715.666 kb on - strand, within ABZR87_RS03430 at 715.736 kb on + strand, within ABZR87_RS03430 at 715.736 kb on + strand, within ABZR87_RS03430 at 715.737 kb on - strand, within ABZR87_RS03430 at 715.737 kb on - strand, within ABZR87_RS03430 at 715.737 kb on - strand, within ABZR87_RS03430 at 715.737 kb on - strand, within ABZR87_RS03430 at 715.747 kb on + strand, within ABZR87_RS03430 at 715.747 kb on + strand, within ABZR87_RS03430 at 715.835 kb on + strand, within ABZR87_RS03430 at 715.835 kb on + strand, within ABZR87_RS03430 at 715.847 kb on + strand, within ABZR87_RS03430 at 715.848 kb on - strand, within ABZR87_RS03430 at 715.848 kb on - strand, within ABZR87_RS03430 at 716.001 kb on - strand at 716.013 kb on + strand at 716.036 kb on + strand at 716.036 kb on + strand at 716.036 kb on + strand at 716.036 kb on + strand at 716.036 kb on + strand at 716.037 kb on - strand at 716.037 kb on - strand at 716.037 kb on - strand at 716.037 kb on - strand at 716.122 kb on + strand at 716.122 kb on + strand at 716.122 kb on + strand at 716.123 kb on - strand at 716.123 kb on - strand at 716.123 kb on - strand at 716.123 kb on - strand at 716.149 kb on + strand at 716.149 kb on + strand at 716.149 kb on + strand at 716.150 kb on - strand at 716.150 kb on - strand at 716.150 kb on - strand at 716.150 kb on - strand at 716.150 kb on - strand at 716.150 kb on - strand at 716.448 kb on + strand, within ABZR87_RS03435 at 716.565 kb on + strand, within ABZR87_RS03435 at 716.566 kb on - strand, within ABZR87_RS03435 at 716.566 kb on - strand, within ABZR87_RS03435 at 716.566 kb on - strand, within ABZR87_RS03435 at 716.566 kb on - strand, within ABZR87_RS03435 at 716.566 kb on - strand, within ABZR87_RS03435 at 716.837 kb on + strand, within ABZR87_RS03435 at 716.837 kb on + strand, within ABZR87_RS03435 at 716.838 kb on - strand, within ABZR87_RS03435 at 716.838 kb on - strand, within ABZR87_RS03435 at 716.838 kb on - strand, within ABZR87_RS03435
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 714,014 + ABZR87_RS03420 0.63 +0.4 714,162 + +0.4 714,162 + +0.1 714,162 + -1.0 714,162 + +0.3 714,162 + +0.7 714,162 + -0.6 714,163 - -1.1 714,163 - -0.0 714,163 - +0.6 714,334 + ABZR87_RS03425 0.25 +1.6 714,334 + ABZR87_RS03425 0.25 -1.1 714,334 + ABZR87_RS03425 0.25 -0.9 714,335 - ABZR87_RS03425 0.26 -0.5 714,335 - ABZR87_RS03425 0.26 +0.4 714,479 - ABZR87_RS03425 0.45 -0.8 714,479 - ABZR87_RS03425 0.45 -2.8 714,592 + ABZR87_RS03425 0.60 +0.5 714,592 + ABZR87_RS03425 0.60 -0.8 714,593 - ABZR87_RS03425 0.60 -0.3 714,658 + ABZR87_RS03425 0.69 -0.5 714,738 + ABZR87_RS03425 0.80 -2.0 714,738 + ABZR87_RS03425 0.80 +0.1 714,738 + ABZR87_RS03425 0.80 -1.4 714,738 + ABZR87_RS03425 0.80 -1.0 714,739 - ABZR87_RS03425 0.80 -2.1 714,739 - ABZR87_RS03425 0.80 -0.2 715,026 + ABZR87_RS03430 0.13 -1.1 715,026 + ABZR87_RS03430 0.13 -1.2 715,027 - ABZR87_RS03430 0.13 -1.1 715,244 + ABZR87_RS03430 0.33 -0.4 715,244 + ABZR87_RS03430 0.33 -2.6 715,244 + ABZR87_RS03430 0.33 -0.9 715,245 - ABZR87_RS03430 0.33 -0.5 715,245 - ABZR87_RS03430 0.33 -0.6 715,245 - ABZR87_RS03430 0.33 +0.2 715,245 - ABZR87_RS03430 0.33 -1.2 715,245 - ABZR87_RS03430 0.33 -1.9 715,245 - ABZR87_RS03430 0.33 -1.1 715,245 - ABZR87_RS03430 0.33 -1.7 715,245 - ABZR87_RS03430 0.33 -1.0 715,364 + ABZR87_RS03430 0.44 +1.1 715,365 - ABZR87_RS03430 0.44 +0.4 715,365 - ABZR87_RS03430 0.44 -0.8 715,424 + ABZR87_RS03430 0.49 -3.5 715,424 + ABZR87_RS03430 0.49 -1.6 715,424 + ABZR87_RS03430 0.49 -1.2 715,424 + ABZR87_RS03430 0.49 -1.2 715,425 - ABZR87_RS03430 0.50 -1.2 715,425 - ABZR87_RS03430 0.50 +0.8 715,425 - ABZR87_RS03430 0.50 -0.8 715,425 - ABZR87_RS03430 0.50 -0.4 715,425 - ABZR87_RS03430 0.50 -0.2 715,425 - ABZR87_RS03430 0.50 -0.5 715,574 + ABZR87_RS03430 0.63 -1.3 715,607 + ABZR87_RS03430 0.66 -1.0 715,607 + ABZR87_RS03430 0.66 -1.6 715,608 - ABZR87_RS03430 0.66 -0.9 715,608 - ABZR87_RS03430 0.66 -0.3 715,665 + ABZR87_RS03430 0.72 -0.2 715,665 + ABZR87_RS03430 0.72 -0.7 715,666 - ABZR87_RS03430 0.72 -1.0 715,736 + ABZR87_RS03430 0.78 -3.6 715,736 + ABZR87_RS03430 0.78 -2.4 715,737 - ABZR87_RS03430 0.78 -3.4 715,737 - ABZR87_RS03430 0.78 -1.9 715,737 - ABZR87_RS03430 0.78 -1.4 715,737 - ABZR87_RS03430 0.78 -1.4 715,747 + ABZR87_RS03430 0.79 +0.0 715,747 + ABZR87_RS03430 0.79 -0.7 715,835 + ABZR87_RS03430 0.88 +0.2 715,835 + ABZR87_RS03430 0.88 -0.7 715,847 + ABZR87_RS03430 0.89 -0.4 715,848 - ABZR87_RS03430 0.89 -1.3 715,848 - ABZR87_RS03430 0.89 -0.4 716,001 - +0.1 716,013 + -0.1 716,036 + -1.9 716,036 + -0.3 716,036 + -0.9 716,036 + -0.9 716,036 + +0.8 716,037 - -0.8 716,037 - -0.9 716,037 - +0.5 716,037 - +0.5 716,122 + -0.2 716,122 + +0.3 716,122 + -0.6 716,123 - -0.2 716,123 - -1.4 716,123 - -2.5 716,123 - -0.4 716,149 + +1.2 716,149 + -2.1 716,149 + -0.2 716,150 - -1.7 716,150 - -0.6 716,150 - -1.2 716,150 - -0.7 716,150 - +0.2 716,150 - -0.9 716,448 + ABZR87_RS03435 0.22 -0.9 716,565 + ABZR87_RS03435 0.30 -0.4 716,566 - ABZR87_RS03435 0.30 -0.3 716,566 - ABZR87_RS03435 0.30 +0.1 716,566 - ABZR87_RS03435 0.30 -0.7 716,566 - ABZR87_RS03435 0.30 -1.2 716,566 - ABZR87_RS03435 0.30 -1.0 716,837 + ABZR87_RS03435 0.49 -0.5 716,837 + ABZR87_RS03435 0.49 +0.0 716,838 - ABZR87_RS03435 0.49 -1.7 716,838 - ABZR87_RS03435 0.49 +0.3 716,838 - ABZR87_RS03435 0.49 -0.7
Or see this region's nucleotide sequence