Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02295 and ABZR87_RS02300 are separated by 158 nucleotides ABZR87_RS02300 and ABZR87_RS02305 are separated by 9 nucleotides ABZR87_RS02305 and ABZR87_RS02310 overlap by 4 nucleotides
ABZR87_RS02295: ABZR87_RS02295 - hypothetical protein, at 492,628 to 492,939
_RS02295
ABZR87_RS02300: ABZR87_RS02300 - aminoacyl-tRNA deacylase, at 493,098 to 493,586
_RS02300
ABZR87_RS02305: ABZR87_RS02305 - CDGSH iron-sulfur domain-containing protein, at 493,596 to 493,820
_RS02305
ABZR87_RS02310: ABZR87_RS02310 - energy-dependent translational throttle protein EttA, at 493,817 to 495,484
_RS02310
Position (kb) 493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 492.726 kb on - strand, within ABZR87_RS02295 at 492.742 kb on + strand, within ABZR87_RS02295 at 492.742 kb on + strand, within ABZR87_RS02295 at 492.742 kb on + strand, within ABZR87_RS02295 at 492.742 kb on + strand, within ABZR87_RS02295 at 492.742 kb on + strand, within ABZR87_RS02295 at 492.743 kb on - strand, within ABZR87_RS02295 at 492.743 kb on - strand, within ABZR87_RS02295 at 492.743 kb on - strand, within ABZR87_RS02295 at 492.743 kb on - strand, within ABZR87_RS02295 at 492.763 kb on + strand, within ABZR87_RS02295 at 492.763 kb on + strand, within ABZR87_RS02295 at 492.763 kb on + strand, within ABZR87_RS02295 at 492.764 kb on - strand, within ABZR87_RS02295 at 492.764 kb on - strand, within ABZR87_RS02295 at 492.784 kb on + strand, within ABZR87_RS02295 at 492.784 kb on + strand, within ABZR87_RS02295 at 492.784 kb on + strand, within ABZR87_RS02295 at 492.785 kb on - strand, within ABZR87_RS02295 at 492.785 kb on - strand, within ABZR87_RS02295 at 492.785 kb on - strand, within ABZR87_RS02295 at 492.802 kb on + strand, within ABZR87_RS02295 at 492.803 kb on - strand, within ABZR87_RS02295 at 492.803 kb on - strand, within ABZR87_RS02295 at 492.803 kb on - strand, within ABZR87_RS02295 at 492.823 kb on + strand, within ABZR87_RS02295 at 492.832 kb on + strand, within ABZR87_RS02295 at 492.832 kb on + strand, within ABZR87_RS02295 at 492.832 kb on + strand, within ABZR87_RS02295 at 492.835 kb on + strand, within ABZR87_RS02295 at 492.851 kb on - strand, within ABZR87_RS02295 at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.039 kb on - strand at 493.039 kb on - strand at 493.039 kb on - strand at 493.039 kb on - strand at 493.039 kb on - strand at 493.039 kb on - strand at 493.048 kb on + strand at 493.049 kb on - strand at 493.049 kb on - strand at 493.149 kb on + strand, within ABZR87_RS02300 at 493.150 kb on - strand, within ABZR87_RS02300 at 493.150 kb on - strand, within ABZR87_RS02300 at 493.150 kb on - strand, within ABZR87_RS02300 at 493.150 kb on - strand, within ABZR87_RS02300 at 493.172 kb on + strand, within ABZR87_RS02300 at 493.172 kb on + strand, within ABZR87_RS02300 at 493.178 kb on + strand, within ABZR87_RS02300 at 493.178 kb on + strand, within ABZR87_RS02300 at 493.179 kb on - strand, within ABZR87_RS02300 at 493.179 kb on - strand, within ABZR87_RS02300 at 493.179 kb on - strand, within ABZR87_RS02300 at 493.237 kb on + strand, within ABZR87_RS02300 at 493.237 kb on + strand, within ABZR87_RS02300 at 493.261 kb on - strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.288 kb on - strand, within ABZR87_RS02300 at 493.288 kb on - strand, within ABZR87_RS02300 at 493.288 kb on - strand, within ABZR87_RS02300 at 493.288 kb on - strand, within ABZR87_RS02300 at 493.288 kb on - strand, within ABZR87_RS02300 at 493.417 kb on - strand, within ABZR87_RS02300 at 493.417 kb on - strand, within ABZR87_RS02300 at 493.417 kb on - strand, within ABZR87_RS02300 at 493.431 kb on + strand, within ABZR87_RS02300 at 493.431 kb on + strand, within ABZR87_RS02300 at 493.431 kb on + strand, within ABZR87_RS02300 at 493.431 kb on + strand, within ABZR87_RS02300 at 493.432 kb on - strand, within ABZR87_RS02300 at 493.432 kb on - strand, within ABZR87_RS02300 at 493.432 kb on - strand, within ABZR87_RS02300 at 493.432 kb on - strand, within ABZR87_RS02300 at 493.432 kb on - strand, within ABZR87_RS02300 at 493.467 kb on + strand, within ABZR87_RS02300 at 493.468 kb on - strand, within ABZR87_RS02300 at 493.468 kb on - strand, within ABZR87_RS02300 at 493.468 kb on - strand, within ABZR87_RS02300 at 493.468 kb on - strand, within ABZR87_RS02300 at 493.502 kb on + strand, within ABZR87_RS02300 at 493.502 kb on + strand, within ABZR87_RS02300 at 493.502 kb on + strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.693 kb on + strand, within ABZR87_RS02305 at 493.694 kb on - strand, within ABZR87_RS02305 at 493.819 kb on - strand at 493.826 kb on - strand at 493.896 kb on + strand at 493.896 kb on + strand at 493.896 kb on + strand at 493.896 kb on + strand at 493.896 kb on + strand at 493.905 kb on + strand at 493.906 kb on - strand at 493.906 kb on - strand at 494.205 kb on + strand, within ABZR87_RS02310 at 494.205 kb on + strand, within ABZR87_RS02310 at 494.205 kb on + strand, within ABZR87_RS02310 at 494.205 kb on + strand, within ABZR87_RS02310 at 494.205 kb on + strand, within ABZR87_RS02310 at 494.206 kb on - strand, within ABZR87_RS02310 at 494.206 kb on - strand, within ABZR87_RS02310 at 494.316 kb on + strand, within ABZR87_RS02310 at 494.317 kb on - strand, within ABZR87_RS02310 at 494.317 kb on - strand, within ABZR87_RS02310 at 494.401 kb on + strand, within ABZR87_RS02310 at 494.401 kb on + strand, within ABZR87_RS02310 at 494.487 kb on + strand, within ABZR87_RS02310 at 494.487 kb on + strand, within ABZR87_RS02310 at 494.487 kb on + strand, within ABZR87_RS02310 at 494.487 kb on + strand, within ABZR87_RS02310 at 494.487 kb on + strand, within ABZR87_RS02310 at 494.488 kb on - strand, within ABZR87_RS02310 at 494.488 kb on - strand, within ABZR87_RS02310 at 494.488 kb on - strand, within ABZR87_RS02310 at 494.488 kb on - strand, within ABZR87_RS02310 at 494.488 kb on - strand, within ABZR87_RS02310 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 492,726 - ABZR87_RS02295 0.31 -0.4 492,742 + ABZR87_RS02295 0.37 -0.9 492,742 + ABZR87_RS02295 0.37 +0.3 492,742 + ABZR87_RS02295 0.37 -0.9 492,742 + ABZR87_RS02295 0.37 -0.5 492,742 + ABZR87_RS02295 0.37 +1.0 492,743 - ABZR87_RS02295 0.37 +0.1 492,743 - ABZR87_RS02295 0.37 -0.5 492,743 - ABZR87_RS02295 0.37 -0.5 492,743 - ABZR87_RS02295 0.37 +0.1 492,763 + ABZR87_RS02295 0.43 -0.6 492,763 + ABZR87_RS02295 0.43 +0.4 492,763 + ABZR87_RS02295 0.43 -1.0 492,764 - ABZR87_RS02295 0.44 -0.2 492,764 - ABZR87_RS02295 0.44 +0.8 492,784 + ABZR87_RS02295 0.50 +0.0 492,784 + ABZR87_RS02295 0.50 +0.8 492,784 + ABZR87_RS02295 0.50 +0.2 492,785 - ABZR87_RS02295 0.50 -0.1 492,785 - ABZR87_RS02295 0.50 -0.8 492,785 - ABZR87_RS02295 0.50 -0.3 492,802 + ABZR87_RS02295 0.56 +0.4 492,803 - ABZR87_RS02295 0.56 -1.9 492,803 - ABZR87_RS02295 0.56 -0.1 492,803 - ABZR87_RS02295 0.56 -0.3 492,823 + ABZR87_RS02295 0.62 -0.7 492,832 + ABZR87_RS02295 0.65 +0.2 492,832 + ABZR87_RS02295 0.65 +0.2 492,832 + ABZR87_RS02295 0.65 +0.9 492,835 + ABZR87_RS02295 0.66 +0.9 492,851 - ABZR87_RS02295 0.71 -0.0 493,038 + +0.1 493,038 + -0.0 493,038 + -1.4 493,038 + +0.7 493,038 + -0.5 493,038 + +1.7 493,038 + -0.0 493,038 + -1.0 493,038 + -0.0 493,038 + -1.4 493,038 + +0.7 493,038 + -0.7 493,038 + -0.5 493,039 - +0.6 493,039 - +0.2 493,039 - +0.1 493,039 - -0.3 493,039 - -0.1 493,039 - +1.3 493,048 + +0.8 493,049 - +0.7 493,049 - +1.0 493,149 + ABZR87_RS02300 0.10 +0.9 493,150 - ABZR87_RS02300 0.11 -0.7 493,150 - ABZR87_RS02300 0.11 -0.9 493,150 - ABZR87_RS02300 0.11 -0.4 493,150 - ABZR87_RS02300 0.11 -0.1 493,172 + ABZR87_RS02300 0.15 -0.3 493,172 + ABZR87_RS02300 0.15 -0.4 493,178 + ABZR87_RS02300 0.16 -0.9 493,178 + ABZR87_RS02300 0.16 -0.1 493,179 - ABZR87_RS02300 0.17 -0.3 493,179 - ABZR87_RS02300 0.17 -1.1 493,179 - ABZR87_RS02300 0.17 +0.2 493,237 + ABZR87_RS02300 0.28 -0.4 493,237 + ABZR87_RS02300 0.28 -0.7 493,261 - ABZR87_RS02300 0.33 +1.1 493,287 + ABZR87_RS02300 0.39 -0.6 493,287 + ABZR87_RS02300 0.39 +0.3 493,287 + ABZR87_RS02300 0.39 +0.3 493,287 + ABZR87_RS02300 0.39 +0.0 493,287 + ABZR87_RS02300 0.39 -0.0 493,287 + ABZR87_RS02300 0.39 -0.9 493,287 + ABZR87_RS02300 0.39 -1.9 493,288 - ABZR87_RS02300 0.39 +1.7 493,288 - ABZR87_RS02300 0.39 +0.7 493,288 - ABZR87_RS02300 0.39 +0.2 493,288 - ABZR87_RS02300 0.39 -0.3 493,288 - ABZR87_RS02300 0.39 -0.6 493,417 - ABZR87_RS02300 0.65 +0.0 493,417 - ABZR87_RS02300 0.65 +0.1 493,417 - ABZR87_RS02300 0.65 +0.2 493,431 + ABZR87_RS02300 0.68 +0.3 493,431 + ABZR87_RS02300 0.68 -0.6 493,431 + ABZR87_RS02300 0.68 -0.3 493,431 + ABZR87_RS02300 0.68 +1.3 493,432 - ABZR87_RS02300 0.68 +0.1 493,432 - ABZR87_RS02300 0.68 +0.3 493,432 - ABZR87_RS02300 0.68 +1.1 493,432 - ABZR87_RS02300 0.68 -0.3 493,432 - ABZR87_RS02300 0.68 -0.1 493,467 + ABZR87_RS02300 0.75 -1.6 493,468 - ABZR87_RS02300 0.76 +2.2 493,468 - ABZR87_RS02300 0.76 -0.1 493,468 - ABZR87_RS02300 0.76 -0.5 493,468 - ABZR87_RS02300 0.76 -0.8 493,502 + ABZR87_RS02300 0.83 -0.8 493,502 + ABZR87_RS02300 0.83 -0.4 493,502 + ABZR87_RS02300 0.83 -0.3 493,503 - ABZR87_RS02300 0.83 -0.7 493,503 - ABZR87_RS02300 0.83 -0.4 493,503 - ABZR87_RS02300 0.83 -0.1 493,503 - ABZR87_RS02300 0.83 -0.8 493,503 - ABZR87_RS02300 0.83 +1.3 493,503 - ABZR87_RS02300 0.83 -0.2 493,503 - ABZR87_RS02300 0.83 +0.6 493,503 - ABZR87_RS02300 0.83 +0.0 493,693 + ABZR87_RS02305 0.43 -0.5 493,694 - ABZR87_RS02305 0.44 -1.1 493,819 - -0.1 493,826 - +0.1 493,896 + -0.4 493,896 + -0.2 493,896 + +0.3 493,896 + +0.0 493,896 + +0.1 493,905 + +0.4 493,906 - -0.9 493,906 - -1.3 494,205 + ABZR87_RS02310 0.23 -0.1 494,205 + ABZR87_RS02310 0.23 +0.4 494,205 + ABZR87_RS02310 0.23 +0.4 494,205 + ABZR87_RS02310 0.23 -0.1 494,205 + ABZR87_RS02310 0.23 -0.1 494,206 - ABZR87_RS02310 0.23 +1.4 494,206 - ABZR87_RS02310 0.23 +0.3 494,316 + ABZR87_RS02310 0.30 -0.9 494,317 - ABZR87_RS02310 0.30 -1.4 494,317 - ABZR87_RS02310 0.30 -0.5 494,401 + ABZR87_RS02310 0.35 +0.5 494,401 + ABZR87_RS02310 0.35 -0.5 494,487 + ABZR87_RS02310 0.40 -0.2 494,487 + ABZR87_RS02310 0.40 -0.5 494,487 + ABZR87_RS02310 0.40 +0.9 494,487 + ABZR87_RS02310 0.40 -0.3 494,487 + ABZR87_RS02310 0.40 -0.3 494,488 - ABZR87_RS02310 0.40 -0.1 494,488 - ABZR87_RS02310 0.40 -0.6 494,488 - ABZR87_RS02310 0.40 +0.3 494,488 - ABZR87_RS02310 0.40 -0.1 494,488 - ABZR87_RS02310 0.40 +0.4 494,754 + ABZR87_RS02310 0.56 +1.3 494,754 + ABZR87_RS02310 0.56 +0.7 494,754 + ABZR87_RS02310 0.56 -0.3 494,754 + ABZR87_RS02310 0.56 -1.8 494,754 + ABZR87_RS02310 0.56 -0.2 494,754 + ABZR87_RS02310 0.56 -1.1 494,754 + ABZR87_RS02310 0.56 -0.3 494,755 - ABZR87_RS02310 0.56 -0.1 494,755 - ABZR87_RS02310 0.56 -0.9 494,755 - ABZR87_RS02310 0.56 -0.2 494,755 - ABZR87_RS02310 0.56 -0.5 494,755 - ABZR87_RS02310 0.56 -0.9 494,755 - ABZR87_RS02310 0.56 +1.0 494,755 - ABZR87_RS02310 0.56 -0.7 494,755 - ABZR87_RS02310 0.56 +0.7
Or see this region's nucleotide sequence