Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02140 and ABZR87_RS02145 are separated by 16 nucleotides ABZR87_RS02145 and ABZR87_RS02150 overlap by 1 nucleotides ABZR87_RS02150 and ABZR87_RS02155 are separated by 13 nucleotides
ABZR87_RS02140: ABZR87_RS02140 - anthranilate synthase component I, at 459,127 to 460,656
_RS02140
ABZR87_RS02145: ABZR87_RS02145 - aminodeoxychorismate/anthranilate synthase component II, at 460,673 to 461,242
_RS02145
ABZR87_RS02150: ABZR87_RS02150 - lysozyme inhibitor LprI family protein, at 461,242 to 461,679
_RS02150
ABZR87_RS02155: ABZR87_RS02155 - anthranilate phosphoribosyltransferase, at 461,693 to 462,730
_RS02155
Position (kb) 460
461
462 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 459.677 kb on - strand, within ABZR87_RS02140 at 459.677 kb on - strand, within ABZR87_RS02140 at 459.677 kb on - strand, within ABZR87_RS02140 at 459.677 kb on - strand, within ABZR87_RS02140 at 459.796 kb on + strand, within ABZR87_RS02140 at 459.796 kb on + strand, within ABZR87_RS02140 at 459.797 kb on - strand, within ABZR87_RS02140 at 459.797 kb on - strand, within ABZR87_RS02140 at 459.797 kb on - strand, within ABZR87_RS02140 at 459.826 kb on + strand, within ABZR87_RS02140 at 459.826 kb on + strand, within ABZR87_RS02140 at 459.826 kb on + strand, within ABZR87_RS02140 at 459.826 kb on + strand, within ABZR87_RS02140 at 459.826 kb on + strand, within ABZR87_RS02140 at 459.826 kb on + strand, within ABZR87_RS02140 at 459.827 kb on - strand, within ABZR87_RS02140 at 459.827 kb on - strand, within ABZR87_RS02140 at 459.827 kb on - strand, within ABZR87_RS02140 at 459.827 kb on - strand, within ABZR87_RS02140 at 459.827 kb on - strand, within ABZR87_RS02140 at 459.940 kb on + strand, within ABZR87_RS02140 at 459.940 kb on + strand, within ABZR87_RS02140 at 459.940 kb on + strand, within ABZR87_RS02140 at 459.940 kb on + strand, within ABZR87_RS02140 at 459.940 kb on + strand, within ABZR87_RS02140 at 459.940 kb on + strand, within ABZR87_RS02140 at 459.941 kb on - strand, within ABZR87_RS02140 at 459.941 kb on - strand, within ABZR87_RS02140 at 459.946 kb on + strand, within ABZR87_RS02140 at 459.946 kb on + strand, within ABZR87_RS02140 at 459.946 kb on + strand, within ABZR87_RS02140 at 459.946 kb on + strand, within ABZR87_RS02140 at 459.946 kb on + strand, within ABZR87_RS02140 at 459.946 kb on + strand, within ABZR87_RS02140 at 459.946 kb on + strand, within ABZR87_RS02140 at 459.946 kb on + strand, within ABZR87_RS02140 at 459.946 kb on + strand, within ABZR87_RS02140 at 459.946 kb on + strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.947 kb on - strand, within ABZR87_RS02140 at 459.952 kb on + strand, within ABZR87_RS02140 at 459.952 kb on + strand, within ABZR87_RS02140 at 459.952 kb on + strand, within ABZR87_RS02140 at 459.953 kb on - strand, within ABZR87_RS02140 at 459.953 kb on - strand, within ABZR87_RS02140 at 459.953 kb on - strand, within ABZR87_RS02140 at 459.953 kb on - strand, within ABZR87_RS02140 at 460.268 kb on - strand, within ABZR87_RS02140 at 460.268 kb on - strand, within ABZR87_RS02140 at 460.268 kb on - strand, within ABZR87_RS02140 at 460.268 kb on - strand, within ABZR87_RS02140 at 460.435 kb on + strand, within ABZR87_RS02140 at 460.435 kb on + strand, within ABZR87_RS02140 at 460.435 kb on + strand, within ABZR87_RS02140 at 460.435 kb on + strand, within ABZR87_RS02140 at 460.435 kb on + strand, within ABZR87_RS02140 at 460.436 kb on - strand, within ABZR87_RS02140 at 460.436 kb on - strand, within ABZR87_RS02140 at 460.436 kb on - strand, within ABZR87_RS02140 at 460.436 kb on - strand, within ABZR87_RS02140 at 460.436 kb on - strand, within ABZR87_RS02140 at 460.453 kb on + strand, within ABZR87_RS02140 at 460.454 kb on - strand, within ABZR87_RS02140 at 460.454 kb on - strand, within ABZR87_RS02140 at 460.454 kb on - strand, within ABZR87_RS02140 at 460.454 kb on - strand, within ABZR87_RS02140 at 460.525 kb on + strand at 460.525 kb on + strand at 460.525 kb on + strand at 460.525 kb on + strand at 460.525 kb on + strand at 460.525 kb on + strand at 460.525 kb on + strand at 460.525 kb on + strand at 460.526 kb on - strand at 460.526 kb on - strand at 460.526 kb on - strand at 460.526 kb on - strand at 460.526 kb on - strand at 460.547 kb on + strand at 460.547 kb on + strand at 460.547 kb on + strand at 460.660 kb on + strand at 460.661 kb on - strand at 460.690 kb on + strand at 460.691 kb on - strand at 460.694 kb on + strand at 460.694 kb on + strand at 460.694 kb on + strand at 460.694 kb on + strand at 460.694 kb on + strand at 460.694 kb on + strand at 460.694 kb on + strand at 460.694 kb on + strand at 460.695 kb on - strand at 460.695 kb on - strand at 460.695 kb on - strand at 460.695 kb on - strand at 460.695 kb on - strand at 460.705 kb on + strand at 460.705 kb on + strand at 460.705 kb on + strand at 460.706 kb on - strand at 460.706 kb on - strand at 460.706 kb on - strand at 460.709 kb on + strand at 460.709 kb on + strand at 460.709 kb on + strand at 460.709 kb on + strand at 460.709 kb on + strand at 460.710 kb on - strand at 460.710 kb on - strand at 460.710 kb on - strand at 460.710 kb on - strand at 460.710 kb on - strand at 460.710 kb on - strand at 460.710 kb on - strand at 460.724 kb on + strand at 460.724 kb on + strand at 460.724 kb on + strand at 461.051 kb on + strand, within ABZR87_RS02145 at 461.051 kb on + strand, within ABZR87_RS02145 at 461.052 kb on - strand, within ABZR87_RS02145 at 461.101 kb on + strand, within ABZR87_RS02145 at 461.512 kb on + strand, within ABZR87_RS02150 at 461.513 kb on - strand, within ABZR87_RS02150 at 461.513 kb on - strand, within ABZR87_RS02150 at 461.513 kb on - strand, within ABZR87_RS02150 at 461.681 kb on + strand at 461.681 kb on + strand at 461.681 kb on + strand at 461.681 kb on + strand at 461.682 kb on - strand at 461.728 kb on + strand at 461.729 kb on - strand at 462.025 kb on + strand, within ABZR87_RS02155 at 462.025 kb on + strand, within ABZR87_RS02155 at 462.025 kb on + strand, within ABZR87_RS02155 at 462.025 kb on + strand, within ABZR87_RS02155 at 462.026 kb on - strand, within ABZR87_RS02155
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 459,677 - ABZR87_RS02140 0.36 -0.4 459,677 - ABZR87_RS02140 0.36 -1.0 459,677 - ABZR87_RS02140 0.36 -1.3 459,677 - ABZR87_RS02140 0.36 -1.3 459,796 + ABZR87_RS02140 0.44 +0.1 459,796 + ABZR87_RS02140 0.44 -0.4 459,797 - ABZR87_RS02140 0.44 -0.8 459,797 - ABZR87_RS02140 0.44 -1.0 459,797 - ABZR87_RS02140 0.44 -1.8 459,826 + ABZR87_RS02140 0.46 -1.0 459,826 + ABZR87_RS02140 0.46 -0.8 459,826 + ABZR87_RS02140 0.46 -1.3 459,826 + ABZR87_RS02140 0.46 -0.1 459,826 + ABZR87_RS02140 0.46 -1.9 459,826 + ABZR87_RS02140 0.46 -1.3 459,827 - ABZR87_RS02140 0.46 -2.7 459,827 - ABZR87_RS02140 0.46 -1.4 459,827 - ABZR87_RS02140 0.46 -0.9 459,827 - ABZR87_RS02140 0.46 -2.1 459,827 - ABZR87_RS02140 0.46 -2.6 459,940 + ABZR87_RS02140 0.53 -1.0 459,940 + ABZR87_RS02140 0.53 -1.8 459,940 + ABZR87_RS02140 0.53 -3.9 459,940 + ABZR87_RS02140 0.53 -1.1 459,940 + ABZR87_RS02140 0.53 -0.7 459,940 + ABZR87_RS02140 0.53 -1.1 459,941 - ABZR87_RS02140 0.53 -1.3 459,941 - ABZR87_RS02140 0.53 -3.3 459,946 + ABZR87_RS02140 0.54 -2.0 459,946 + ABZR87_RS02140 0.54 -1.7 459,946 + ABZR87_RS02140 0.54 -1.0 459,946 + ABZR87_RS02140 0.54 -1.8 459,946 + ABZR87_RS02140 0.54 -1.4 459,946 + ABZR87_RS02140 0.54 -0.2 459,946 + ABZR87_RS02140 0.54 -2.2 459,946 + ABZR87_RS02140 0.54 -0.7 459,946 + ABZR87_RS02140 0.54 -1.7 459,946 + ABZR87_RS02140 0.54 -0.5 459,947 - ABZR87_RS02140 0.54 -1.5 459,947 - ABZR87_RS02140 0.54 -2.2 459,947 - ABZR87_RS02140 0.54 -1.6 459,947 - ABZR87_RS02140 0.54 -0.0 459,947 - ABZR87_RS02140 0.54 -2.7 459,947 - ABZR87_RS02140 0.54 -1.6 459,947 - ABZR87_RS02140 0.54 -1.7 459,947 - ABZR87_RS02140 0.54 -1.4 459,947 - ABZR87_RS02140 0.54 -0.7 459,947 - ABZR87_RS02140 0.54 -0.3 459,947 - ABZR87_RS02140 0.54 +0.2 459,947 - ABZR87_RS02140 0.54 -0.8 459,947 - ABZR87_RS02140 0.54 -1.0 459,947 - ABZR87_RS02140 0.54 -1.5 459,952 + ABZR87_RS02140 0.54 -1.1 459,952 + ABZR87_RS02140 0.54 -1.9 459,952 + ABZR87_RS02140 0.54 -1.7 459,953 - ABZR87_RS02140 0.54 +0.2 459,953 - ABZR87_RS02140 0.54 -2.1 459,953 - ABZR87_RS02140 0.54 -2.0 459,953 - ABZR87_RS02140 0.54 -1.3 460,268 - ABZR87_RS02140 0.75 -2.2 460,268 - ABZR87_RS02140 0.75 -1.8 460,268 - ABZR87_RS02140 0.75 -1.1 460,268 - ABZR87_RS02140 0.75 -2.8 460,435 + ABZR87_RS02140 0.85 -0.6 460,435 + ABZR87_RS02140 0.85 +0.7 460,435 + ABZR87_RS02140 0.85 -1.7 460,435 + ABZR87_RS02140 0.85 -1.3 460,435 + ABZR87_RS02140 0.85 -3.7 460,436 - ABZR87_RS02140 0.86 -0.6 460,436 - ABZR87_RS02140 0.86 -1.5 460,436 - ABZR87_RS02140 0.86 -1.8 460,436 - ABZR87_RS02140 0.86 -2.8 460,436 - ABZR87_RS02140 0.86 -1.2 460,453 + ABZR87_RS02140 0.87 -1.2 460,454 - ABZR87_RS02140 0.87 -1.6 460,454 - ABZR87_RS02140 0.87 -1.9 460,454 - ABZR87_RS02140 0.87 -2.3 460,454 - ABZR87_RS02140 0.87 -0.9 460,525 + -2.1 460,525 + -1.0 460,525 + -0.8 460,525 + -1.1 460,525 + -0.5 460,525 + -2.1 460,525 + -0.8 460,525 + -1.4 460,526 - -2.3 460,526 - -0.6 460,526 - +0.2 460,526 - -0.7 460,526 - -1.8 460,547 + -2.3 460,547 + -1.7 460,547 + +0.5 460,660 + -0.4 460,661 - -1.0 460,690 + -0.3 460,691 - -2.2 460,694 + -1.7 460,694 + -0.8 460,694 + -1.8 460,694 + -0.8 460,694 + -2.1 460,694 + -1.2 460,694 + -1.1 460,694 + -0.9 460,695 - -2.6 460,695 - -1.6 460,695 - -0.6 460,695 - -2.8 460,695 - -2.6 460,705 + -0.1 460,705 + -1.3 460,705 + -0.9 460,706 - -0.8 460,706 - +0.7 460,706 - -1.7 460,709 + -1.2 460,709 + -1.3 460,709 + -1.4 460,709 + -1.7 460,709 + +0.1 460,710 - -1.0 460,710 - -3.0 460,710 - -2.7 460,710 - -4.0 460,710 - -1.0 460,710 - -0.7 460,710 - -2.5 460,724 + -1.4 460,724 + -3.4 460,724 + -2.6 461,051 + ABZR87_RS02145 0.66 -0.7 461,051 + ABZR87_RS02145 0.66 -1.0 461,052 - ABZR87_RS02145 0.66 -0.7 461,101 + ABZR87_RS02145 0.75 -1.1 461,512 + ABZR87_RS02150 0.62 -0.9 461,513 - ABZR87_RS02150 0.62 +0.4 461,513 - ABZR87_RS02150 0.62 -0.4 461,513 - ABZR87_RS02150 0.62 -2.0 461,681 + -0.1 461,681 + -1.5 461,681 + -0.1 461,681 + -0.3 461,682 - -1.3 461,728 + -1.4 461,729 - -3.1 462,025 + ABZR87_RS02155 0.32 -1.2 462,025 + ABZR87_RS02155 0.32 -1.3 462,025 + ABZR87_RS02155 0.32 -1.4 462,025 + ABZR87_RS02155 0.32 -2.5 462,026 - ABZR87_RS02155 0.32 -1.3
Or see this region's nucleotide sequence