Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02060 and ABZR87_RS02065 are separated by 262 nucleotides ABZR87_RS02065 and ABZR87_RS02070 are separated by 178 nucleotides ABZR87_RS02070 and ABZR87_RS02075 are separated by 114 nucleotides
ABZR87_RS02060: ABZR87_RS02060 - acetylornithine deacetylase, at 443,048 to 444,250
_RS02060
ABZR87_RS02065: ABZR87_RS02065 - M20 aminoacylase family protein, at 444,513 to 445,700
_RS02065
ABZR87_RS02070: ABZR87_RS02070 - 5S ribosomal RNA, at 445,879 to 445,991
_RS02070
ABZR87_RS02075: ABZR87_RS02075 - 23S ribosomal RNA, at 446,106 to 448,984
_RS02075
Position (kb) 444
445
446 Strain fitness (log2 ratio) -2
-1
0
1
2 at 443.590 kb on + strand, within ABZR87_RS02060 at 443.590 kb on + strand, within ABZR87_RS02060 at 443.590 kb on + strand, within ABZR87_RS02060 at 443.591 kb on - strand, within ABZR87_RS02060 at 443.591 kb on - strand, within ABZR87_RS02060 at 443.591 kb on - strand, within ABZR87_RS02060 at 443.591 kb on - strand, within ABZR87_RS02060 at 443.683 kb on - strand, within ABZR87_RS02060 at 443.683 kb on - strand, within ABZR87_RS02060 at 443.820 kb on + strand, within ABZR87_RS02060 at 443.820 kb on + strand, within ABZR87_RS02060 at 443.821 kb on - strand, within ABZR87_RS02060 at 443.821 kb on - strand, within ABZR87_RS02060 at 443.821 kb on - strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.875 kb on + strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.085 kb on - strand, within ABZR87_RS02060 at 444.085 kb on - strand, within ABZR87_RS02060 at 444.336 kb on + strand at 444.336 kb on + strand at 444.336 kb on + strand at 444.336 kb on + strand at 444.337 kb on - strand at 444.337 kb on - strand at 444.337 kb on - strand at 444.365 kb on + strand at 444.365 kb on + strand at 444.365 kb on + strand at 444.366 kb on - strand at 444.402 kb on + strand at 444.465 kb on + strand at 444.465 kb on + strand at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.856 kb on - strand, within ABZR87_RS02065 at 444.856 kb on - strand, within ABZR87_RS02065 at 444.856 kb on - strand, within ABZR87_RS02065 at 444.856 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.173 kb on - strand, within ABZR87_RS02065 at 445.173 kb on - strand, within ABZR87_RS02065 at 445.356 kb on + strand, within ABZR87_RS02065 at 445.357 kb on - strand, within ABZR87_RS02065 at 445.357 kb on - strand, within ABZR87_RS02065 at 445.357 kb on - strand, within ABZR87_RS02065 at 445.393 kb on - strand, within ABZR87_RS02065 at 445.393 kb on - strand, within ABZR87_RS02065 at 445.506 kb on + strand, within ABZR87_RS02065 at 445.528 kb on - strand, within ABZR87_RS02065 at 445.623 kb on + strand at 445.623 kb on + strand at 445.623 kb on + strand at 445.623 kb on + strand at 445.623 kb on + strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.662 kb on + strand at 445.662 kb on + strand at 445.662 kb on + strand at 445.662 kb on + strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.694 kb on + strand at 445.694 kb on + strand at 445.694 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.703 kb on - strand at 445.703 kb on - strand at 445.703 kb on - strand at 445.703 kb on - strand at 445.722 kb on + strand at 445.722 kb on + strand at 445.722 kb on + strand at 446.105 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 443,590 + ABZR87_RS02060 0.45 -0.6 443,590 + ABZR87_RS02060 0.45 +0.0 443,590 + ABZR87_RS02060 0.45 -0.1 443,591 - ABZR87_RS02060 0.45 -0.3 443,591 - ABZR87_RS02060 0.45 +0.2 443,591 - ABZR87_RS02060 0.45 -0.1 443,591 - ABZR87_RS02060 0.45 +0.0 443,683 - ABZR87_RS02060 0.53 -0.6 443,683 - ABZR87_RS02060 0.53 +0.4 443,820 + ABZR87_RS02060 0.64 +0.3 443,820 + ABZR87_RS02060 0.64 -0.1 443,821 - ABZR87_RS02060 0.64 -0.3 443,821 - ABZR87_RS02060 0.64 +0.3 443,821 - ABZR87_RS02060 0.64 -0.7 443,831 + ABZR87_RS02060 0.65 +0.2 443,831 + ABZR87_RS02060 0.65 +2.3 443,831 + ABZR87_RS02060 0.65 +0.7 443,831 + ABZR87_RS02060 0.65 +0.5 443,831 + ABZR87_RS02060 0.65 -0.4 443,831 + ABZR87_RS02060 0.65 -1.7 443,831 + ABZR87_RS02060 0.65 -0.2 443,831 + ABZR87_RS02060 0.65 -0.5 443,831 + ABZR87_RS02060 0.65 +0.0 443,832 - ABZR87_RS02060 0.65 +0.5 443,832 - ABZR87_RS02060 0.65 +0.5 443,832 - ABZR87_RS02060 0.65 -0.2 443,832 - ABZR87_RS02060 0.65 +0.5 443,832 - ABZR87_RS02060 0.65 -0.7 443,875 + ABZR87_RS02060 0.69 -0.3 443,876 - ABZR87_RS02060 0.69 +0.2 443,876 - ABZR87_RS02060 0.69 +0.3 443,876 - ABZR87_RS02060 0.69 -0.1 443,876 - ABZR87_RS02060 0.69 -2.3 443,876 - ABZR87_RS02060 0.69 +0.2 444,084 + ABZR87_RS02060 0.86 +0.4 444,084 + ABZR87_RS02060 0.86 +0.4 444,084 + ABZR87_RS02060 0.86 -0.7 444,084 + ABZR87_RS02060 0.86 -0.2 444,084 + ABZR87_RS02060 0.86 -2.0 444,084 + ABZR87_RS02060 0.86 +0.4 444,085 - ABZR87_RS02060 0.86 +0.0 444,085 - ABZR87_RS02060 0.86 +0.3 444,336 + +1.0 444,336 + -0.0 444,336 + +0.1 444,336 + -1.5 444,337 - +0.5 444,337 - +0.0 444,337 - -0.7 444,365 + +0.5 444,365 + -1.2 444,365 + +0.7 444,366 - +0.3 444,402 + -0.5 444,465 + +0.4 444,465 + -0.5 444,855 + ABZR87_RS02065 0.29 +0.5 444,855 + ABZR87_RS02065 0.29 -0.1 444,855 + ABZR87_RS02065 0.29 +0.8 444,855 + ABZR87_RS02065 0.29 -1.7 444,855 + ABZR87_RS02065 0.29 +0.0 444,855 + ABZR87_RS02065 0.29 -0.1 444,855 + ABZR87_RS02065 0.29 +0.4 444,855 + ABZR87_RS02065 0.29 -0.7 444,856 - ABZR87_RS02065 0.29 +0.9 444,856 - ABZR87_RS02065 0.29 +0.0 444,856 - ABZR87_RS02065 0.29 -0.2 444,856 - ABZR87_RS02065 0.29 -1.1 445,148 - ABZR87_RS02065 0.53 -0.9 445,148 - ABZR87_RS02065 0.53 -0.2 445,148 - ABZR87_RS02065 0.53 +0.5 445,148 - ABZR87_RS02065 0.53 -0.2 445,172 + ABZR87_RS02065 0.55 -1.4 445,172 + ABZR87_RS02065 0.55 +0.2 445,172 + ABZR87_RS02065 0.55 +0.5 445,173 - ABZR87_RS02065 0.56 -0.6 445,173 - ABZR87_RS02065 0.56 +0.5 445,356 + ABZR87_RS02065 0.71 -0.0 445,357 - ABZR87_RS02065 0.71 +0.6 445,357 - ABZR87_RS02065 0.71 -1.4 445,357 - ABZR87_RS02065 0.71 +0.1 445,393 - ABZR87_RS02065 0.74 -0.7 445,393 - ABZR87_RS02065 0.74 -0.7 445,506 + ABZR87_RS02065 0.84 +1.6 445,528 - ABZR87_RS02065 0.85 -0.5 445,623 + +0.5 445,623 + +0.5 445,623 + +0.9 445,623 + -0.4 445,623 + -0.1 445,624 - -0.5 445,624 - +1.7 445,624 - -0.7 445,624 - +1.4 445,624 - -0.6 445,624 - +0.6 445,624 - -0.3 445,624 - -1.5 445,662 + +0.2 445,662 + +1.4 445,662 + +0.6 445,662 + +0.3 445,663 - +0.7 445,663 - +1.3 445,663 - +0.1 445,663 - -0.1 445,663 - +0.2 445,694 + +1.6 445,694 + -0.4 445,694 + +0.8 445,698 + +0.2 445,698 + +0.3 445,698 + -1.2 445,698 + -0.8 445,698 + -0.6 445,698 + -1.4 445,698 + +0.1 445,698 + -0.4 445,698 + -2.3 445,698 + -0.9 445,698 + -0.6 445,698 + +0.2 445,698 + +0.2 445,698 + -0.0 445,698 + -0.4 445,698 + -0.2 445,698 + -0.3 445,699 - -0.1 445,699 - -1.8 445,699 - -0.1 445,699 - +0.1 445,699 - +0.6 445,699 - -1.0 445,699 - +0.3 445,699 - -0.6 445,699 - -0.5 445,703 - -0.0 445,703 - +0.2 445,703 - +0.9 445,703 - +0.5 445,722 + +0.4 445,722 + -0.4 445,722 + +1.3 446,105 + -1.4
Or see this region's nucleotide sequence