Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01970 and ABZR87_RS01975 overlap by 4 nucleotides ABZR87_RS01975 and ABZR87_RS01980 are separated by 28 nucleotides ABZR87_RS01980 and ABZR87_RS01985 are separated by 9 nucleotides ABZR87_RS01985 and ABZR87_RS01990 are separated by 380 nucleotides
ABZR87_RS01970: ABZR87_RS01970 - penicillin-binding protein 2, at 420,190 to 421,977
_RS01970
ABZR87_RS01975: ABZR87_RS01975 - cell division protein FtsL, at 421,974 to 422,318
_RS01975
ABZR87_RS01980: ABZR87_RS01980 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 422,347 to 423,306
_RS01980
ABZR87_RS01985: ABZR87_RS01985 - division/cell wall cluster transcriptional repressor MraZ, at 423,316 to 423,744
_RS01985
ABZR87_RS01990: ABZR87_RS01990 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase, at 424,125 to 424,778
_RS01990
Position (kb) 422
423
424 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 422.663 kb on - strand, within ABZR87_RS01980 at 422.663 kb on - strand, within ABZR87_RS01980 at 422.663 kb on - strand, within ABZR87_RS01980 at 422.813 kb on - strand, within ABZR87_RS01980 at 422.813 kb on - strand, within ABZR87_RS01980 at 422.835 kb on - strand, within ABZR87_RS01980 at 423.216 kb on - strand at 423.216 kb on - strand at 423.216 kb on - strand at 423.384 kb on - strand, within ABZR87_RS01985 at 423.384 kb on - strand, within ABZR87_RS01985 at 423.819 kb on - strand at 423.859 kb on - strand at 423.932 kb on + strand at 423.932 kb on + strand at 423.986 kb on - strand at 423.986 kb on - strand at 423.986 kb on - strand at 424.000 kb on - strand at 424.000 kb on - strand at 424.000 kb on - strand at 424.000 kb on - strand at 424.135 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 422,663 - ABZR87_RS01980 0.33 -1.0 422,663 - ABZR87_RS01980 0.33 -0.7 422,663 - ABZR87_RS01980 0.33 -3.9 422,813 - ABZR87_RS01980 0.49 -1.4 422,813 - ABZR87_RS01980 0.49 -1.5 422,835 - ABZR87_RS01980 0.51 -0.2 423,216 - -1.0 423,216 - -1.0 423,216 - -0.6 423,384 - ABZR87_RS01985 0.16 -0.8 423,384 - ABZR87_RS01985 0.16 +0.3 423,819 - +0.5 423,859 - -0.4 423,932 + -1.5 423,932 + -0.1 423,986 - -0.6 423,986 - +0.1 423,986 - -1.0 424,000 - -1.6 424,000 - -0.8 424,000 - +0.6 424,000 - +0.0 424,135 + -0.4
Or see this region's nucleotide sequence