Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01800 and ABZR87_RS01805 are separated by 5 nucleotides ABZR87_RS01805 and ABZR87_RS01810 are separated by 95 nucleotides ABZR87_RS01810 and ABZR87_RS01815 are separated by 33 nucleotides
ABZR87_RS01800: ABZR87_RS01800 - RNA pyrophosphohydrolase, at 383,502 to 384,209
_RS01800
ABZR87_RS01805: ABZR87_RS01805 - CNP1-like family protein, at 384,215 to 384,847
_RS01805
ABZR87_RS01810: ABZR87_RS01810 - glutamate 5-kinase, at 384,943 to 386,067
_RS01810
ABZR87_RS01815: ABZR87_RS01815 - GTPase ObgE, at 386,101 to 387,195
_RS01815
Position (kb) 384
385
386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 383.998 kb on - strand, within ABZR87_RS01800 at 384.047 kb on + strand, within ABZR87_RS01800 at 384.087 kb on + strand, within ABZR87_RS01800 at 384.087 kb on + strand, within ABZR87_RS01800 at 384.087 kb on + strand, within ABZR87_RS01800 at 384.087 kb on + strand, within ABZR87_RS01800 at 384.088 kb on - strand, within ABZR87_RS01800 at 384.088 kb on - strand, within ABZR87_RS01800 at 384.295 kb on + strand, within ABZR87_RS01805 at 384.497 kb on + strand, within ABZR87_RS01805 at 384.497 kb on + strand, within ABZR87_RS01805 at 384.498 kb on - strand, within ABZR87_RS01805 at 384.498 kb on - strand, within ABZR87_RS01805 at 384.542 kb on + strand, within ABZR87_RS01805 at 384.542 kb on + strand, within ABZR87_RS01805 at 384.542 kb on + strand, within ABZR87_RS01805 at 384.542 kb on + strand, within ABZR87_RS01805 at 384.542 kb on + strand, within ABZR87_RS01805 at 384.542 kb on + strand, within ABZR87_RS01805 at 384.543 kb on - strand, within ABZR87_RS01805 at 384.543 kb on - strand, within ABZR87_RS01805 at 384.581 kb on + strand, within ABZR87_RS01805 at 384.581 kb on + strand, within ABZR87_RS01805 at 384.581 kb on + strand, within ABZR87_RS01805 at 384.582 kb on - strand, within ABZR87_RS01805 at 384.582 kb on - strand, within ABZR87_RS01805 at 384.677 kb on + strand, within ABZR87_RS01805 at 384.677 kb on + strand, within ABZR87_RS01805 at 384.678 kb on - strand, within ABZR87_RS01805 at 384.678 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.753 kb on - strand, within ABZR87_RS01805 at 384.796 kb on + strand at 384.796 kb on + strand at 384.797 kb on - strand at 384.797 kb on - strand at 384.797 kb on - strand at 384.836 kb on + strand at 384.836 kb on + strand at 384.846 kb on - strand at 384.869 kb on + strand at 384.869 kb on + strand at 384.869 kb on + strand at 384.869 kb on + strand at 384.870 kb on - strand at 384.870 kb on - strand at 384.870 kb on - strand at 384.870 kb on - strand at 384.870 kb on - strand at 384.870 kb on - strand at 384.992 kb on + strand at 385.058 kb on + strand, within ABZR87_RS01810 at 385.058 kb on + strand, within ABZR87_RS01810 at 385.058 kb on + strand, within ABZR87_RS01810 at 385.059 kb on - strand, within ABZR87_RS01810 at 385.059 kb on - strand, within ABZR87_RS01810 at 385.059 kb on - strand, within ABZR87_RS01810 at 386.103 kb on - strand at 386.103 kb on - strand at 386.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 383,998 - ABZR87_RS01800 0.70 -0.2 384,047 + ABZR87_RS01800 0.77 -1.2 384,087 + ABZR87_RS01800 0.83 +0.9 384,087 + ABZR87_RS01800 0.83 +1.1 384,087 + ABZR87_RS01800 0.83 -1.2 384,087 + ABZR87_RS01800 0.83 +0.9 384,088 - ABZR87_RS01800 0.83 -2.9 384,088 - ABZR87_RS01800 0.83 -0.3 384,295 + ABZR87_RS01805 0.13 -0.3 384,497 + ABZR87_RS01805 0.45 +2.4 384,497 + ABZR87_RS01805 0.45 -0.8 384,498 - ABZR87_RS01805 0.45 +0.4 384,498 - ABZR87_RS01805 0.45 +0.4 384,542 + ABZR87_RS01805 0.52 -0.0 384,542 + ABZR87_RS01805 0.52 -1.0 384,542 + ABZR87_RS01805 0.52 +0.5 384,542 + ABZR87_RS01805 0.52 -0.0 384,542 + ABZR87_RS01805 0.52 -1.9 384,542 + ABZR87_RS01805 0.52 -0.8 384,543 - ABZR87_RS01805 0.52 -0.9 384,543 - ABZR87_RS01805 0.52 +0.3 384,581 + ABZR87_RS01805 0.58 -0.3 384,581 + ABZR87_RS01805 0.58 +0.5 384,581 + ABZR87_RS01805 0.58 -0.3 384,582 - ABZR87_RS01805 0.58 +0.2 384,582 - ABZR87_RS01805 0.58 -2.2 384,677 + ABZR87_RS01805 0.73 -1.3 384,677 + ABZR87_RS01805 0.73 -0.2 384,678 - ABZR87_RS01805 0.73 +0.2 384,678 - ABZR87_RS01805 0.73 -0.0 384,729 - ABZR87_RS01805 0.81 +0.9 384,729 - ABZR87_RS01805 0.81 -0.5 384,729 - ABZR87_RS01805 0.81 +0.1 384,729 - ABZR87_RS01805 0.81 -0.2 384,729 - ABZR87_RS01805 0.81 +0.0 384,729 - ABZR87_RS01805 0.81 +0.1 384,729 - ABZR87_RS01805 0.81 -0.8 384,753 - ABZR87_RS01805 0.85 -0.4 384,796 + +0.1 384,796 + -0.4 384,797 - -0.8 384,797 - +0.2 384,797 - -0.9 384,836 + -2.7 384,836 + -0.1 384,846 - -1.6 384,869 + +0.5 384,869 + -0.7 384,869 + +0.2 384,869 + +1.3 384,870 - -1.1 384,870 - +0.7 384,870 - +0.9 384,870 - +0.7 384,870 - +0.9 384,870 - -0.4 384,992 + -1.1 385,058 + ABZR87_RS01810 0.10 -0.6 385,058 + ABZR87_RS01810 0.10 -1.7 385,058 + ABZR87_RS01810 0.10 -1.1 385,059 - ABZR87_RS01810 0.10 -0.0 385,059 - ABZR87_RS01810 0.10 +0.0 385,059 - ABZR87_RS01810 0.10 -0.2 386,103 - -0.7 386,103 - -0.2 386,103 - +0.3
Or see this region's nucleotide sequence