Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01630 and ABZR87_RS01635 are separated by 78 nucleotides ABZR87_RS01635 and ABZR87_RS01640 are separated by 65 nucleotides ABZR87_RS01640 and ABZR87_RS01645 are separated by 181 nucleotides ABZR87_RS01645 and ABZR87_RS01650 are separated by 141 nucleotides
ABZR87_RS01630: ABZR87_RS01630 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 342,323 to 343,708
_RS01630
ABZR87_RS01635: ABZR87_RS01635 - hypothetical protein, at 343,787 to 344,461
_RS01635
ABZR87_RS01640: ABZR87_RS01640 - TlpA disulfide reductase family protein, at 344,527 to 345,051
_RS01640
ABZR87_RS01645: ABZR87_RS01645 - type II 3-dehydroquinate dehydratase, at 345,233 to 345,700
_RS01645
ABZR87_RS01650: ABZR87_RS01650 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 345,842 to 346,309
_RS01650
Position (kb) 344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 343.605 kb on + strand at 343.702 kb on + strand at 343.702 kb on + strand at 343.703 kb on - strand at 343.703 kb on - strand at 343.703 kb on - strand at 343.703 kb on - strand at 343.729 kb on - strand at 343.741 kb on + strand at 343.741 kb on + strand at 343.741 kb on + strand at 343.741 kb on + strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.775 kb on + strand at 343.776 kb on - strand at 343.776 kb on - strand at 343.776 kb on - strand at 343.776 kb on - strand at 343.780 kb on + strand at 343.780 kb on + strand at 343.781 kb on - strand at 343.781 kb on - strand at 343.878 kb on - strand, within ABZR87_RS01635 at 343.985 kb on + strand, within ABZR87_RS01635 at 343.986 kb on - strand, within ABZR87_RS01635 at 344.084 kb on + strand, within ABZR87_RS01635 at 344.084 kb on + strand, within ABZR87_RS01635 at 344.085 kb on - strand, within ABZR87_RS01635 at 344.085 kb on - strand, within ABZR87_RS01635 at 344.085 kb on - strand, within ABZR87_RS01635 at 344.350 kb on + strand, within ABZR87_RS01635 at 344.351 kb on - strand, within ABZR87_RS01635 at 344.351 kb on - strand, within ABZR87_RS01635 at 344.351 kb on - strand, within ABZR87_RS01635 at 344.360 kb on + strand, within ABZR87_RS01635 at 344.360 kb on + strand, within ABZR87_RS01635 at 344.360 kb on + strand, within ABZR87_RS01635 at 344.361 kb on + strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.476 kb on + strand at 344.476 kb on + strand at 344.477 kb on - strand at 344.477 kb on - strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.653 kb on + strand, within ABZR87_RS01640 at 344.654 kb on - strand, within ABZR87_RS01640 at 344.654 kb on - strand, within ABZR87_RS01640 at 344.848 kb on - strand, within ABZR87_RS01640 at 344.959 kb on - strand, within ABZR87_RS01640 at 345.067 kb on + strand at 345.067 kb on + strand at 345.067 kb on + strand at 345.067 kb on + strand at 345.067 kb on + strand at 345.068 kb on - strand at 345.068 kb on - strand at 345.326 kb on + strand, within ABZR87_RS01645 at 345.326 kb on + strand, within ABZR87_RS01645 at 345.326 kb on + strand, within ABZR87_RS01645 at 345.548 kb on + strand, within ABZR87_RS01645 at 345.548 kb on + strand, within ABZR87_RS01645 at 345.548 kb on + strand, within ABZR87_RS01645 at 345.548 kb on + strand, within ABZR87_RS01645 at 345.605 kb on + strand, within ABZR87_RS01645 at 345.720 kb on + strand at 345.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 343,605 + -1.8 343,702 + -0.9 343,702 + -1.0 343,703 - -1.0 343,703 - -1.0 343,703 - -2.2 343,703 - -0.3 343,729 - -0.0 343,741 + -0.1 343,741 + +0.2 343,741 + +0.3 343,741 + -0.5 343,742 - +0.1 343,742 - +0.2 343,742 - +0.4 343,742 - -0.0 343,742 - +0.9 343,742 - +0.1 343,775 + +0.3 343,776 - -0.6 343,776 - +1.4 343,776 - +0.1 343,776 - +0.9 343,780 + +0.2 343,780 + +0.3 343,781 - -0.1 343,781 - +0.7 343,878 - ABZR87_RS01635 0.13 +1.4 343,985 + ABZR87_RS01635 0.29 +0.1 343,986 - ABZR87_RS01635 0.29 +0.1 344,084 + ABZR87_RS01635 0.44 +0.2 344,084 + ABZR87_RS01635 0.44 -0.4 344,085 - ABZR87_RS01635 0.44 -0.4 344,085 - ABZR87_RS01635 0.44 +0.4 344,085 - ABZR87_RS01635 0.44 +0.0 344,350 + ABZR87_RS01635 0.83 +0.1 344,351 - ABZR87_RS01635 0.84 -0.6 344,351 - ABZR87_RS01635 0.84 +0.5 344,351 - ABZR87_RS01635 0.84 -0.2 344,360 + ABZR87_RS01635 0.85 +0.3 344,360 + ABZR87_RS01635 0.85 +0.3 344,360 + ABZR87_RS01635 0.85 -1.2 344,361 + ABZR87_RS01635 0.85 +0.1 344,361 - ABZR87_RS01635 0.85 +0.4 344,361 - ABZR87_RS01635 0.85 -2.2 344,361 - ABZR87_RS01635 0.85 +0.0 344,361 - ABZR87_RS01635 0.85 +1.1 344,361 - ABZR87_RS01635 0.85 +0.6 344,476 + -0.1 344,476 + -0.6 344,477 - +0.2 344,477 - -0.7 344,503 + -0.2 344,503 + +0.9 344,503 + +0.7 344,503 + +0.1 344,503 + +1.4 344,503 + -0.6 344,504 - -0.0 344,504 - -0.7 344,504 - -0.9 344,504 - +0.4 344,504 - -1.1 344,504 - +0.1 344,504 - -0.2 344,504 - +0.3 344,504 - -0.2 344,504 - -0.0 344,504 - +0.2 344,504 - -0.6 344,504 - -0.3 344,505 + +0.4 344,505 + -0.1 344,505 + -1.3 344,505 + -0.2 344,505 + +0.1 344,505 + -0.5 344,505 + +0.7 344,505 + +0.6 344,505 + -1.2 344,505 + +0.5 344,505 + -1.7 344,505 + -1.3 344,505 + -0.8 344,505 + +0.2 344,505 + -0.2 344,505 + +0.3 344,505 + -0.1 344,505 + +0.9 344,506 - +0.8 344,506 - -1.4 344,506 - +1.2 344,506 - -0.9 344,506 - -0.3 344,506 - +0.7 344,506 - -0.2 344,506 - +0.0 344,506 - +1.4 344,506 - -1.9 344,506 - +0.0 344,506 - -1.1 344,506 - +0.0 344,506 - +1.6 344,506 - +0.6 344,506 - -0.8 344,506 - +0.1 344,506 - -0.4 344,507 + +0.0 344,507 + +1.0 344,507 + +0.5 344,507 + +0.7 344,507 + -1.5 344,507 + -0.4 344,507 + -0.1 344,507 + +0.6 344,507 + -0.2 344,507 + +1.8 344,507 + -0.0 344,507 + +0.4 344,507 + -0.7 344,507 + +0.2 344,507 + -2.1 344,507 + -0.9 344,507 + +0.2 344,507 + -0.1 344,507 + +0.3 344,507 + +0.9 344,507 + +0.2 344,507 + +0.2 344,507 + -0.7 344,507 + +0.5 344,507 + -0.4 344,507 + +0.1 344,507 + +0.5 344,508 - -0.6 344,508 - -0.6 344,508 - -0.2 344,508 - +0.1 344,508 - +1.1 344,508 - -0.3 344,508 - +0.1 344,508 - -0.7 344,508 - -0.4 344,508 - +0.1 344,508 - -0.5 344,508 - -0.5 344,508 - -0.2 344,508 - -0.8 344,508 - +0.4 344,508 - +0.6 344,508 - -0.3 344,508 - -0.4 344,508 - -0.6 344,508 - -0.4 344,509 + +0.5 344,509 + +0.2 344,509 + +0.2 344,509 + +0.5 344,509 + -1.3 344,509 + +0.6 344,509 + +0.4 344,509 + +0.5 344,509 + +0.5 344,509 + +0.8 344,509 + -0.6 344,509 + -0.0 344,509 + +0.5 344,509 + -0.0 344,509 + -0.8 344,510 - -2.5 344,510 - -1.0 344,510 - -0.5 344,510 - -0.1 344,510 - -0.2 344,510 - +0.6 344,510 - -0.3 344,510 - -0.3 344,510 - +1.3 344,510 - -0.4 344,510 - -0.1 344,510 - -0.6 344,510 - -0.2 344,510 - -1.2 344,510 - -0.7 344,510 - +0.2 344,510 - +0.2 344,510 - -2.2 344,510 - -0.7 344,510 - -1.2 344,510 - -0.2 344,510 - -0.7 344,510 - -0.3 344,510 - +0.2 344,510 - -0.8 344,653 + ABZR87_RS01640 0.24 -0.4 344,654 - ABZR87_RS01640 0.24 -0.3 344,654 - ABZR87_RS01640 0.24 -0.8 344,848 - ABZR87_RS01640 0.61 -0.5 344,959 - ABZR87_RS01640 0.82 -1.0 345,067 + +0.1 345,067 + +0.1 345,067 + +1.1 345,067 + +1.2 345,067 + -0.8 345,068 - -0.1 345,068 - +0.4 345,326 + ABZR87_RS01645 0.20 -0.2 345,326 + ABZR87_RS01645 0.20 +0.4 345,326 + ABZR87_RS01645 0.20 -2.7 345,548 + ABZR87_RS01645 0.67 -0.2 345,548 + ABZR87_RS01645 0.67 -0.7 345,548 + ABZR87_RS01645 0.67 +1.1 345,548 + ABZR87_RS01645 0.67 -0.2 345,605 + ABZR87_RS01645 0.79 -3.0 345,720 + +0.9 345,733 + -0.9
Or see this region's nucleotide sequence