Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01605 and ABZR87_RS01610 are separated by 11 nucleotides ABZR87_RS01610 and ABZR87_RS01615 are separated by 52 nucleotides ABZR87_RS01615 and ABZR87_RS01620 are separated by 154 nucleotides ABZR87_RS01620 and ABZR87_RS01625 overlap by 4 nucleotides
ABZR87_RS01605: ABZR87_RS01605 - shikimate dehydrogenase, at 336,971 to 337,888
_RS01605
ABZR87_RS01610: ABZR87_RS01610 - energy transducer TonB, at 337,900 to 338,814
_RS01610
ABZR87_RS01615: ABZR87_RS01615 - RNB domain-containing ribonuclease, at 338,867 to 340,963
_RS01615
ABZR87_RS01620: ABZR87_RS01620 - chorismate lyase, at 341,118 to 341,696
_RS01620
ABZR87_RS01625: ABZR87_RS01625 - YqiA/YcfP family alpha/beta fold hydrolase, at 341,693 to 342,316
_RS01625
Position (kb) 338
339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 338.096 kb on + strand, within ABZR87_RS01610 at 338.097 kb on - strand, within ABZR87_RS01610 at 338.112 kb on - strand, within ABZR87_RS01610 at 338.162 kb on + strand, within ABZR87_RS01610 at 338.162 kb on + strand, within ABZR87_RS01610 at 338.162 kb on + strand, within ABZR87_RS01610 at 338.162 kb on + strand, within ABZR87_RS01610 at 338.163 kb on - strand, within ABZR87_RS01610 at 338.163 kb on - strand, within ABZR87_RS01610 at 338.234 kb on + strand, within ABZR87_RS01610 at 338.234 kb on + strand, within ABZR87_RS01610 at 338.234 kb on + strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.235 kb on - strand, within ABZR87_RS01610 at 338.237 kb on + strand, within ABZR87_RS01610 at 338.246 kb on + strand, within ABZR87_RS01610 at 338.247 kb on - strand, within ABZR87_RS01610 at 338.303 kb on + strand, within ABZR87_RS01610 at 338.303 kb on + strand, within ABZR87_RS01610 at 338.303 kb on + strand, within ABZR87_RS01610 at 338.303 kb on + strand, within ABZR87_RS01610 at 338.304 kb on - strand, within ABZR87_RS01610 at 338.304 kb on - strand, within ABZR87_RS01610 at 338.304 kb on - strand, within ABZR87_RS01610 at 338.458 kb on - strand, within ABZR87_RS01610 at 338.576 kb on + strand, within ABZR87_RS01610 at 338.576 kb on + strand, within ABZR87_RS01610 at 338.577 kb on - strand, within ABZR87_RS01610 at 338.577 kb on - strand, within ABZR87_RS01610 at 338.689 kb on - strand, within ABZR87_RS01610 at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.864 kb on + strand at 338.865 kb on - strand at 338.865 kb on - strand at 338.868 kb on + strand at 338.868 kb on + strand at 338.868 kb on + strand at 338.869 kb on - strand at 338.878 kb on + strand at 339.718 kb on - strand, within ABZR87_RS01615 at 339.718 kb on - strand, within ABZR87_RS01615 at 340.971 kb on + strand at 340.971 kb on + strand at 340.971 kb on - strand at 340.972 kb on - strand at 341.040 kb on + strand at 341.040 kb on + strand at 341.041 kb on - strand at 341.041 kb on - strand at 341.041 kb on - strand at 341.081 kb on - strand at 341.113 kb on + strand at 341.114 kb on - strand at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.633 kb on - strand, within ABZR87_RS01620 at 341.677 kb on + strand at 341.738 kb on - strand at 341.766 kb on + strand, within ABZR87_RS01625 at 341.766 kb on + strand, within ABZR87_RS01625 at 341.766 kb on + strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.886 kb on + strand, within ABZR87_RS01625 at 341.887 kb on - strand, within ABZR87_RS01625 at 341.889 kb on + strand, within ABZR87_RS01625 at 341.889 kb on + strand, within ABZR87_RS01625
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 338,096 + ABZR87_RS01610 0.21 +0.2 338,097 - ABZR87_RS01610 0.22 -1.1 338,112 - ABZR87_RS01610 0.23 -0.1 338,162 + ABZR87_RS01610 0.29 -1.4 338,162 + ABZR87_RS01610 0.29 -0.8 338,162 + ABZR87_RS01610 0.29 -0.1 338,162 + ABZR87_RS01610 0.29 -0.6 338,163 - ABZR87_RS01610 0.29 -0.1 338,163 - ABZR87_RS01610 0.29 +0.4 338,234 + ABZR87_RS01610 0.37 -0.6 338,234 + ABZR87_RS01610 0.37 +3.8 338,234 + ABZR87_RS01610 0.37 -0.6 338,235 - ABZR87_RS01610 0.37 +1.1 338,235 - ABZR87_RS01610 0.37 +0.1 338,235 - ABZR87_RS01610 0.37 +0.6 338,235 - ABZR87_RS01610 0.37 -0.7 338,235 - ABZR87_RS01610 0.37 -0.2 338,237 + ABZR87_RS01610 0.37 +0.1 338,246 + ABZR87_RS01610 0.38 +0.3 338,247 - ABZR87_RS01610 0.38 -0.4 338,303 + ABZR87_RS01610 0.44 +1.2 338,303 + ABZR87_RS01610 0.44 -0.2 338,303 + ABZR87_RS01610 0.44 -0.5 338,303 + ABZR87_RS01610 0.44 -0.2 338,304 - ABZR87_RS01610 0.44 -0.3 338,304 - ABZR87_RS01610 0.44 +0.3 338,304 - ABZR87_RS01610 0.44 -1.2 338,458 - ABZR87_RS01610 0.61 +1.1 338,576 + ABZR87_RS01610 0.74 -0.0 338,576 + ABZR87_RS01610 0.74 +0.1 338,577 - ABZR87_RS01610 0.74 +0.1 338,577 - ABZR87_RS01610 0.74 -0.9 338,689 - ABZR87_RS01610 0.86 +0.2 338,864 + +0.3 338,864 + +0.3 338,864 + -0.0 338,864 + -0.2 338,864 + +0.8 338,864 + -0.1 338,864 + -1.5 338,864 + +0.7 338,864 + -0.0 338,864 + +0.5 338,864 + -1.4 338,865 - +0.8 338,865 - -0.1 338,868 + +0.0 338,868 + +1.1 338,868 + +0.5 338,869 - -0.1 338,878 + -0.7 339,718 - ABZR87_RS01615 0.41 -2.3 339,718 - ABZR87_RS01615 0.41 -3.3 340,971 + -1.1 340,971 + -0.8 340,971 - -0.4 340,972 - +0.6 341,040 + -1.0 341,040 + +0.1 341,041 - +0.2 341,041 - -0.4 341,041 - -0.4 341,081 - -0.2 341,113 + +0.4 341,114 - +0.1 341,425 + ABZR87_RS01620 0.53 -0.3 341,425 + ABZR87_RS01620 0.53 -0.1 341,425 + ABZR87_RS01620 0.53 -0.4 341,425 + ABZR87_RS01620 0.53 -0.2 341,425 + ABZR87_RS01620 0.53 +0.5 341,425 + ABZR87_RS01620 0.53 +0.3 341,425 + ABZR87_RS01620 0.53 +0.3 341,425 + ABZR87_RS01620 0.53 +0.1 341,426 - ABZR87_RS01620 0.53 +0.1 341,426 - ABZR87_RS01620 0.53 +0.8 341,426 - ABZR87_RS01620 0.53 -0.5 341,426 - ABZR87_RS01620 0.53 -0.2 341,426 - ABZR87_RS01620 0.53 +0.3 341,633 - ABZR87_RS01620 0.89 +0.5 341,677 + +0.4 341,738 - -0.3 341,766 + ABZR87_RS01625 0.12 -0.2 341,766 + ABZR87_RS01625 0.12 -0.1 341,766 + ABZR87_RS01625 0.12 -1.3 341,767 - ABZR87_RS01625 0.12 -0.0 341,767 - ABZR87_RS01625 0.12 +0.7 341,767 - ABZR87_RS01625 0.12 +0.7 341,767 - ABZR87_RS01625 0.12 -0.9 341,767 - ABZR87_RS01625 0.12 +0.2 341,886 + ABZR87_RS01625 0.31 -0.1 341,887 - ABZR87_RS01625 0.31 +0.3 341,889 + ABZR87_RS01625 0.31 +0.5 341,889 + ABZR87_RS01625 0.31 +1.9
Or see this region's nucleotide sequence