Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01415 and ABZR87_RS01420 are separated by 122 nucleotides ABZR87_RS01420 and ABZR87_RS01425 are separated by 152 nucleotides ABZR87_RS01425 and ABZR87_RS01430 are separated by 72 nucleotides
ABZR87_RS01415: ABZR87_RS01415 - 4-hydroxy-tetrahydrodipicolinate reductase, at 297,605 to 298,396
_RS01415
ABZR87_RS01420: ABZR87_RS01420 - outer membrane protein assembly factor BamE, at 298,519 to 299,175
_RS01420
ABZR87_RS01425: ABZR87_RS01425 - ferric iron uptake transcriptional regulator, at 299,328 to 299,759
_RS01425
ABZR87_RS01430: ABZR87_RS01430 - LysR family transcriptional regulator, at 299,832 to 300,875
_RS01430
Position (kb) 299
300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 298.436 kb on + strand at 298.436 kb on + strand at 298.560 kb on + strand at 298.560 kb on + strand at 298.561 kb on - strand at 298.561 kb on - strand at 298.561 kb on - strand at 298.561 kb on - strand at 298.878 kb on - strand, within ABZR87_RS01420 at 298.878 kb on - strand, within ABZR87_RS01420 at 299.060 kb on + strand, within ABZR87_RS01420 at 299.061 kb on - strand, within ABZR87_RS01420 at 299.061 kb on - strand, within ABZR87_RS01420 at 299.207 kb on - strand at 299.212 kb on + strand at 299.261 kb on - strand at 299.308 kb on + strand at 299.308 kb on + strand at 299.308 kb on + strand at 299.309 kb on - strand at 299.309 kb on - strand at 299.313 kb on + strand at 299.442 kb on + strand, within ABZR87_RS01425 at 299.442 kb on + strand, within ABZR87_RS01425 at 299.443 kb on - strand, within ABZR87_RS01425 at 299.490 kb on + strand, within ABZR87_RS01425 at 299.490 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.563 kb on - strand, within ABZR87_RS01425 at 299.563 kb on - strand, within ABZR87_RS01425 at 299.563 kb on - strand, within ABZR87_RS01425 at 299.563 kb on - strand, within ABZR87_RS01425 at 299.713 kb on - strand, within ABZR87_RS01425 at 299.953 kb on + strand, within ABZR87_RS01430 at 299.953 kb on + strand, within ABZR87_RS01430 at 300.008 kb on + strand, within ABZR87_RS01430 at 300.008 kb on + strand, within ABZR87_RS01430 at 300.008 kb on + strand, within ABZR87_RS01430 at 300.008 kb on + strand, within ABZR87_RS01430 at 300.008 kb on + strand, within ABZR87_RS01430 at 300.009 kb on - strand, within ABZR87_RS01430 at 300.009 kb on - strand, within ABZR87_RS01430 at 300.009 kb on - strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.089 kb on - strand, within ABZR87_RS01430 at 300.089 kb on - strand, within ABZR87_RS01430 at 300.089 kb on - strand, within ABZR87_RS01430 at 300.089 kb on - strand, within ABZR87_RS01430 at 300.104 kb on + strand, within ABZR87_RS01430 at 300.104 kb on + strand, within ABZR87_RS01430 at 300.104 kb on + strand, within ABZR87_RS01430 at 300.104 kb on + strand, within ABZR87_RS01430 at 300.105 kb on - strand, within ABZR87_RS01430 at 300.105 kb on - strand, within ABZR87_RS01430 at 300.105 kb on - strand, within ABZR87_RS01430 at 300.105 kb on - strand, within ABZR87_RS01430 at 300.176 kb on + strand, within ABZR87_RS01430 at 300.176 kb on + strand, within ABZR87_RS01430 at 300.176 kb on + strand, within ABZR87_RS01430 at 300.176 kb on + strand, within ABZR87_RS01430 at 300.176 kb on + strand, within ABZR87_RS01430 at 300.176 kb on + strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.226 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.696 kb on - strand, within ABZR87_RS01430 at 300.696 kb on - strand, within ABZR87_RS01430 at 300.696 kb on - strand, within ABZR87_RS01430
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 298,436 + +0.5 298,436 + -0.6 298,560 + -0.3 298,560 + -2.2 298,561 - -1.1 298,561 - -0.7 298,561 - -0.6 298,561 - +0.3 298,878 - ABZR87_RS01420 0.55 +0.2 298,878 - ABZR87_RS01420 0.55 -0.9 299,060 + ABZR87_RS01420 0.82 +0.2 299,061 - ABZR87_RS01420 0.82 +0.2 299,061 - ABZR87_RS01420 0.82 +0.2 299,207 - +0.5 299,212 + +0.2 299,261 - +2.3 299,308 + -0.2 299,308 + -2.6 299,308 + -1.4 299,309 - -0.7 299,309 - +0.2 299,313 + -1.2 299,442 + ABZR87_RS01425 0.26 -0.6 299,442 + ABZR87_RS01425 0.26 -0.2 299,443 - ABZR87_RS01425 0.27 -1.8 299,490 + ABZR87_RS01425 0.38 +0.1 299,490 + ABZR87_RS01425 0.38 -0.5 299,562 + ABZR87_RS01425 0.54 -0.9 299,562 + ABZR87_RS01425 0.54 -0.9 299,562 + ABZR87_RS01425 0.54 -0.2 299,562 + ABZR87_RS01425 0.54 -2.8 299,562 + ABZR87_RS01425 0.54 -0.2 299,562 + ABZR87_RS01425 0.54 -1.0 299,562 + ABZR87_RS01425 0.54 -1.2 299,563 - ABZR87_RS01425 0.54 -0.2 299,563 - ABZR87_RS01425 0.54 -2.0 299,563 - ABZR87_RS01425 0.54 +1.1 299,563 - ABZR87_RS01425 0.54 -1.5 299,713 - ABZR87_RS01425 0.89 -1.0 299,953 + ABZR87_RS01430 0.12 +0.3 299,953 + ABZR87_RS01430 0.12 -0.6 300,008 + ABZR87_RS01430 0.17 -0.4 300,008 + ABZR87_RS01430 0.17 -0.5 300,008 + ABZR87_RS01430 0.17 -0.3 300,008 + ABZR87_RS01430 0.17 -0.8 300,008 + ABZR87_RS01430 0.17 -1.0 300,009 - ABZR87_RS01430 0.17 -0.9 300,009 - ABZR87_RS01430 0.17 -0.8 300,009 - ABZR87_RS01430 0.17 -1.0 300,088 + ABZR87_RS01430 0.25 +0.0 300,088 + ABZR87_RS01430 0.25 -0.8 300,088 + ABZR87_RS01430 0.25 -0.9 300,088 + ABZR87_RS01430 0.25 -0.6 300,088 + ABZR87_RS01430 0.25 -0.9 300,088 + ABZR87_RS01430 0.25 -0.7 300,088 + ABZR87_RS01430 0.25 -1.3 300,089 - ABZR87_RS01430 0.25 +0.5 300,089 - ABZR87_RS01430 0.25 -0.8 300,089 - ABZR87_RS01430 0.25 -0.3 300,089 - ABZR87_RS01430 0.25 -0.5 300,104 + ABZR87_RS01430 0.26 -1.4 300,104 + ABZR87_RS01430 0.26 -0.6 300,104 + ABZR87_RS01430 0.26 -0.6 300,104 + ABZR87_RS01430 0.26 -0.5 300,105 - ABZR87_RS01430 0.26 -2.4 300,105 - ABZR87_RS01430 0.26 -0.4 300,105 - ABZR87_RS01430 0.26 +0.2 300,105 - ABZR87_RS01430 0.26 -1.1 300,176 + ABZR87_RS01430 0.33 -1.0 300,176 + ABZR87_RS01430 0.33 -0.9 300,176 + ABZR87_RS01430 0.33 -0.6 300,176 + ABZR87_RS01430 0.33 -0.7 300,176 + ABZR87_RS01430 0.33 -1.2 300,176 + ABZR87_RS01430 0.33 -1.3 300,177 - ABZR87_RS01430 0.33 -0.9 300,177 - ABZR87_RS01430 0.33 -1.1 300,177 - ABZR87_RS01430 0.33 -1.0 300,177 - ABZR87_RS01430 0.33 -0.1 300,177 - ABZR87_RS01430 0.33 -0.9 300,177 - ABZR87_RS01430 0.33 +0.8 300,177 - ABZR87_RS01430 0.33 -2.0 300,226 + ABZR87_RS01430 0.38 -0.9 300,304 + ABZR87_RS01430 0.45 -0.8 300,304 + ABZR87_RS01430 0.45 -1.2 300,304 + ABZR87_RS01430 0.45 -0.5 300,304 + ABZR87_RS01430 0.45 -0.6 300,304 + ABZR87_RS01430 0.45 -0.7 300,304 + ABZR87_RS01430 0.45 -1.8 300,305 - ABZR87_RS01430 0.45 -1.3 300,305 - ABZR87_RS01430 0.45 -0.9 300,305 - ABZR87_RS01430 0.45 -0.2 300,305 - ABZR87_RS01430 0.45 -1.0 300,305 - ABZR87_RS01430 0.45 -0.7 300,305 - ABZR87_RS01430 0.45 +2.4 300,696 - ABZR87_RS01430 0.83 -1.0 300,696 - ABZR87_RS01430 0.83 -1.8 300,696 - ABZR87_RS01430 0.83 -0.9
Or see this region's nucleotide sequence