Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01255 and ABZR87_RS01260 are separated by 152 nucleotides ABZR87_RS01260 and ABZR87_RS01265 are separated by 157 nucleotides
ABZR87_RS01255: ABZR87_RS01255 - LysR substrate-binding domain-containing protein, at 260,014 to 260,961
_RS01255
ABZR87_RS01260: ABZR87_RS01260 - metallophosphoesterase, at 261,114 to 262,280
_RS01260
ABZR87_RS01265: ABZR87_RS01265 - sensor domain-containing diguanylate cyclase, at 262,438 to 263,457
_RS01265
Position (kb) 261
262
263 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.218 kb on - strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.384 kb on - strand, within ABZR87_RS01255 at 260.384 kb on - strand, within ABZR87_RS01255 at 260.480 kb on + strand, within ABZR87_RS01255 at 260.651 kb on + strand, within ABZR87_RS01255 at 260.652 kb on - strand, within ABZR87_RS01255 at 260.652 kb on - strand, within ABZR87_RS01255 at 260.652 kb on - strand, within ABZR87_RS01255 at 260.666 kb on + strand, within ABZR87_RS01255 at 260.666 kb on + strand, within ABZR87_RS01255 at 260.667 kb on - strand, within ABZR87_RS01255 at 260.667 kb on - strand, within ABZR87_RS01255 at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.989 kb on + strand at 260.990 kb on - strand at 261.131 kb on + strand at 261.131 kb on + strand at 261.132 kb on - strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.213 kb on - strand at 261.213 kb on - strand at 261.286 kb on + strand, within ABZR87_RS01260 at 261.453 kb on + strand, within ABZR87_RS01260 at 261.454 kb on - strand, within ABZR87_RS01260 at 261.513 kb on + strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.518 kb on - strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.810 kb on + strand, within ABZR87_RS01260 at 261.810 kb on + strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.813 kb on + strand, within ABZR87_RS01260 at 261.813 kb on + strand, within ABZR87_RS01260 at 262.185 kb on + strand at 262.185 kb on + strand at 262.185 kb on + strand at 262.186 kb on - strand at 262.186 kb on - strand at 262.186 kb on - strand at 262.186 kb on - strand at 262.206 kb on + strand at 262.207 kb on - strand at 262.226 kb on - strand at 262.252 kb on + strand at 262.252 kb on + strand at 262.252 kb on + strand at 262.253 kb on - strand at 262.261 kb on + strand at 262.262 kb on - strand at 262.333 kb on - strand at 262.333 kb on - strand at 262.333 kb on - strand at 262.376 kb on - strand at 262.376 kb on - strand at 262.376 kb on - strand at 262.376 kb on - strand at 262.624 kb on + strand, within ABZR87_RS01265 at 262.624 kb on + strand, within ABZR87_RS01265 at 262.624 kb on + strand, within ABZR87_RS01265 at 262.625 kb on - strand, within ABZR87_RS01265 at 262.625 kb on - strand, within ABZR87_RS01265 at 262.625 kb on - strand, within ABZR87_RS01265 at 262.960 kb on + strand, within ABZR87_RS01265 at 262.960 kb on + strand, within ABZR87_RS01265 at 262.960 kb on + strand, within ABZR87_RS01265 at 262.961 kb on - strand, within ABZR87_RS01265 at 262.961 kb on - strand, within ABZR87_RS01265 at 262.961 kb on - strand, within ABZR87_RS01265 at 262.961 kb on - strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.015 kb on - strand, within ABZR87_RS01265 at 263.015 kb on - strand, within ABZR87_RS01265 at 263.015 kb on - strand, within ABZR87_RS01265 at 263.015 kb on - strand, within ABZR87_RS01265
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 260,171 + ABZR87_RS01255 0.17 -1.5 260,171 + ABZR87_RS01255 0.17 -1.9 260,171 + ABZR87_RS01255 0.17 -0.5 260,171 + ABZR87_RS01255 0.17 -0.2 260,171 + ABZR87_RS01255 0.17 -0.7 260,171 + ABZR87_RS01255 0.17 +0.5 260,172 - ABZR87_RS01255 0.17 -2.6 260,172 - ABZR87_RS01255 0.17 -2.7 260,172 - ABZR87_RS01255 0.17 -0.2 260,172 - ABZR87_RS01255 0.17 -1.2 260,172 - ABZR87_RS01255 0.17 -1.4 260,172 - ABZR87_RS01255 0.17 -0.8 260,217 + ABZR87_RS01255 0.21 -1.2 260,217 + ABZR87_RS01255 0.21 -0.0 260,217 + ABZR87_RS01255 0.21 +0.1 260,217 + ABZR87_RS01255 0.21 -1.9 260,218 - ABZR87_RS01255 0.22 -0.2 260,256 + ABZR87_RS01255 0.26 -0.4 260,256 + ABZR87_RS01255 0.26 +0.1 260,256 + ABZR87_RS01255 0.26 -0.0 260,256 + ABZR87_RS01255 0.26 -1.3 260,256 + ABZR87_RS01255 0.26 -0.3 260,256 + ABZR87_RS01255 0.26 -0.6 260,256 + ABZR87_RS01255 0.26 -0.2 260,256 + ABZR87_RS01255 0.26 +0.7 260,256 + ABZR87_RS01255 0.26 -1.1 260,256 + ABZR87_RS01255 0.26 +0.1 260,256 + ABZR87_RS01255 0.26 +0.7 260,256 + ABZR87_RS01255 0.26 -1.5 260,256 + ABZR87_RS01255 0.26 -1.2 260,256 + ABZR87_RS01255 0.26 -0.2 260,257 - ABZR87_RS01255 0.26 -0.8 260,257 - ABZR87_RS01255 0.26 -0.5 260,257 - ABZR87_RS01255 0.26 -0.0 260,257 - ABZR87_RS01255 0.26 -0.7 260,257 - ABZR87_RS01255 0.26 -1.0 260,257 - ABZR87_RS01255 0.26 +0.6 260,257 - ABZR87_RS01255 0.26 -0.8 260,257 - ABZR87_RS01255 0.26 -0.7 260,257 - ABZR87_RS01255 0.26 -0.7 260,257 - ABZR87_RS01255 0.26 -0.0 260,257 - ABZR87_RS01255 0.26 -0.5 260,257 - ABZR87_RS01255 0.26 -1.2 260,257 - ABZR87_RS01255 0.26 +0.0 260,257 - ABZR87_RS01255 0.26 +1.8 260,257 - ABZR87_RS01255 0.26 +0.1 260,384 - ABZR87_RS01255 0.39 +0.7 260,384 - ABZR87_RS01255 0.39 -0.7 260,480 + ABZR87_RS01255 0.49 +2.2 260,651 + ABZR87_RS01255 0.67 -0.4 260,652 - ABZR87_RS01255 0.67 -0.2 260,652 - ABZR87_RS01255 0.67 -0.2 260,652 - ABZR87_RS01255 0.67 +1.2 260,666 + ABZR87_RS01255 0.69 -0.8 260,666 + ABZR87_RS01255 0.69 +0.1 260,667 - ABZR87_RS01255 0.69 -0.3 260,667 - ABZR87_RS01255 0.69 +0.8 260,939 + +2.3 260,939 + -0.1 260,939 + +0.0 260,939 + +1.0 260,939 + +1.0 260,939 + +0.9 260,939 + +1.8 260,939 + +3.0 260,939 + +1.3 260,939 + +2.2 260,939 + -0.7 260,940 - -1.0 260,940 - -1.7 260,940 - +0.2 260,940 - -1.1 260,940 - -0.1 260,940 - -1.8 260,940 - -1.1 260,940 - +1.8 260,940 - -0.7 260,989 + +1.1 260,990 - +0.1 261,131 + +0.1 261,131 + +0.6 261,132 - +0.7 261,210 + +0.6 261,210 + +2.4 261,210 + +2.1 261,210 + +1.2 261,210 + +0.5 261,210 + +0.5 261,210 + +2.4 261,211 - -0.5 261,211 - +1.0 261,211 - +0.0 261,211 - -0.1 261,211 - +0.2 261,211 - -0.1 261,213 - +0.0 261,213 - -0.0 261,286 + ABZR87_RS01260 0.15 -1.8 261,453 + ABZR87_RS01260 0.29 +2.4 261,454 - ABZR87_RS01260 0.29 +0.1 261,513 + ABZR87_RS01260 0.34 +1.8 261,514 - ABZR87_RS01260 0.34 -1.1 261,514 - ABZR87_RS01260 0.34 +0.2 261,514 - ABZR87_RS01260 0.34 +1.4 261,515 + ABZR87_RS01260 0.34 +1.8 261,515 + ABZR87_RS01260 0.34 +0.8 261,515 + ABZR87_RS01260 0.34 +1.0 261,515 + ABZR87_RS01260 0.34 -1.0 261,516 - ABZR87_RS01260 0.34 +0.1 261,516 - ABZR87_RS01260 0.34 +1.1 261,516 - ABZR87_RS01260 0.34 +0.2 261,516 - ABZR87_RS01260 0.34 +1.2 261,516 - ABZR87_RS01260 0.34 +1.4 261,518 - ABZR87_RS01260 0.35 +0.5 261,645 + ABZR87_RS01260 0.46 +1.8 261,645 + ABZR87_RS01260 0.46 +2.2 261,645 + ABZR87_RS01260 0.46 +2.1 261,645 + ABZR87_RS01260 0.46 +2.0 261,645 + ABZR87_RS01260 0.46 +2.0 261,645 + ABZR87_RS01260 0.46 +3.0 261,645 + ABZR87_RS01260 0.46 +1.5 261,646 - ABZR87_RS01260 0.46 +0.7 261,646 - ABZR87_RS01260 0.46 +1.2 261,646 - ABZR87_RS01260 0.46 +0.8 261,646 - ABZR87_RS01260 0.46 +0.5 261,646 - ABZR87_RS01260 0.46 +0.2 261,646 - ABZR87_RS01260 0.46 -0.5 261,646 - ABZR87_RS01260 0.46 +0.8 261,810 + ABZR87_RS01260 0.60 +3.1 261,810 + ABZR87_RS01260 0.60 +2.8 261,811 - ABZR87_RS01260 0.60 -0.8 261,811 - ABZR87_RS01260 0.60 -0.2 261,811 - ABZR87_RS01260 0.60 -0.5 261,811 - ABZR87_RS01260 0.60 -0.5 261,811 - ABZR87_RS01260 0.60 -0.4 261,813 + ABZR87_RS01260 0.60 +3.3 261,813 + ABZR87_RS01260 0.60 +2.6 262,185 + +3.2 262,185 + +2.6 262,185 + +3.5 262,186 - -0.0 262,186 - +0.7 262,186 - +0.6 262,186 - +0.3 262,206 + +2.1 262,207 - -1.6 262,226 - -0.2 262,252 + +2.3 262,252 + +2.1 262,252 + +2.8 262,253 - -0.4 262,261 + +2.4 262,262 - +0.6 262,333 - +0.8 262,333 - -0.1 262,333 - -0.3 262,376 - +0.1 262,376 - +0.5 262,376 - +2.5 262,376 - -0.5 262,624 + ABZR87_RS01265 0.18 +0.0 262,624 + ABZR87_RS01265 0.18 +0.3 262,624 + ABZR87_RS01265 0.18 +0.0 262,625 - ABZR87_RS01265 0.18 +0.6 262,625 - ABZR87_RS01265 0.18 -0.4 262,625 - ABZR87_RS01265 0.18 +0.2 262,960 + ABZR87_RS01265 0.51 +0.3 262,960 + ABZR87_RS01265 0.51 -0.4 262,960 + ABZR87_RS01265 0.51 -0.3 262,961 - ABZR87_RS01265 0.51 -0.2 262,961 - ABZR87_RS01265 0.51 +0.3 262,961 - ABZR87_RS01265 0.51 -0.2 262,961 - ABZR87_RS01265 0.51 +0.5 263,014 + ABZR87_RS01265 0.56 +0.6 263,014 + ABZR87_RS01265 0.56 -0.5 263,014 + ABZR87_RS01265 0.56 +0.8 263,014 + ABZR87_RS01265 0.56 +0.1 263,014 + ABZR87_RS01265 0.56 +0.1 263,015 - ABZR87_RS01265 0.57 +0.8 263,015 - ABZR87_RS01265 0.57 -0.6 263,015 - ABZR87_RS01265 0.57 +1.0 263,015 - ABZR87_RS01265 0.57 +0.4
Or see this region's nucleotide sequence