Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01105 and ABZR87_RS01110 are separated by 389 nucleotides ABZR87_RS01110 and ABZR87_RS01115 are separated by 170 nucleotides
ABZR87_RS01105: ABZR87_RS01105 - metalloprotease TldD, at 228,328 to 229,791
_RS01105
ABZR87_RS01110: ABZR87_RS01110 - 3-deoxy-7-phosphoheptulonate synthase AroG, at 230,181 to 231,260
_RS01110
ABZR87_RS01115: ABZR87_RS01115 - mechanosensitive ion channel family protein, at 231,431 to 232,333
_RS01115
Position (kb) 230
231
232 Strain fitness (log2 ratio) -2
-1
0
1 at 229.339 kb on + strand, within ABZR87_RS01105 at 229.339 kb on + strand, within ABZR87_RS01105 at 229.340 kb on - strand, within ABZR87_RS01105 at 229.408 kb on + strand, within ABZR87_RS01105 at 229.408 kb on + strand, within ABZR87_RS01105 at 229.409 kb on - strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.445 kb on - strand, within ABZR87_RS01105 at 229.445 kb on - strand, within ABZR87_RS01105 at 229.445 kb on - strand, within ABZR87_RS01105 at 229.445 kb on - strand, within ABZR87_RS01105 at 229.445 kb on - strand, within ABZR87_RS01105 at 229.445 kb on - strand, within ABZR87_RS01105 at 229.504 kb on + strand, within ABZR87_RS01105 at 229.504 kb on + strand, within ABZR87_RS01105 at 229.504 kb on + strand, within ABZR87_RS01105 at 229.504 kb on + strand, within ABZR87_RS01105 at 229.505 kb on - strand, within ABZR87_RS01105 at 229.505 kb on - strand, within ABZR87_RS01105 at 229.505 kb on - strand, within ABZR87_RS01105 at 229.505 kb on - strand, within ABZR87_RS01105 at 229.576 kb on + strand, within ABZR87_RS01105 at 229.576 kb on + strand, within ABZR87_RS01105 at 229.577 kb on - strand, within ABZR87_RS01105 at 229.863 kb on + strand at 229.863 kb on + strand at 229.863 kb on + strand at 229.864 kb on - strand at 229.864 kb on - strand at 229.865 kb on + strand at 229.865 kb on + strand at 229.865 kb on + strand at 229.865 kb on + strand at 229.866 kb on - strand at 229.866 kb on - strand at 229.866 kb on - strand at 229.866 kb on - strand at 229.866 kb on - strand at 229.894 kb on - strand at 229.894 kb on - strand at 229.977 kb on - strand at 229.977 kb on - strand at 230.031 kb on - strand at 230.137 kb on + strand at 230.137 kb on + strand at 230.137 kb on + strand at 230.138 kb on - strand at 230.138 kb on - strand at 230.138 kb on - strand at 230.138 kb on - strand at 230.138 kb on - strand at 230.151 kb on - strand at 230.151 kb on - strand at 230.151 kb on - strand at 230.289 kb on + strand, within ABZR87_RS01110 at 230.289 kb on + strand, within ABZR87_RS01110 at 230.289 kb on + strand, within ABZR87_RS01110 at 230.289 kb on + strand, within ABZR87_RS01110 at 230.289 kb on + strand, within ABZR87_RS01110 at 230.289 kb on + strand, within ABZR87_RS01110 at 230.289 kb on + strand, within ABZR87_RS01110 at 230.290 kb on - strand, within ABZR87_RS01110 at 230.290 kb on - strand, within ABZR87_RS01110 at 230.395 kb on - strand, within ABZR87_RS01110 at 230.460 kb on + strand, within ABZR87_RS01110 at 230.460 kb on + strand, within ABZR87_RS01110 at 230.460 kb on + strand, within ABZR87_RS01110 at 230.610 kb on + strand, within ABZR87_RS01110 at 230.610 kb on + strand, within ABZR87_RS01110 at 230.634 kb on + strand, within ABZR87_RS01110 at 230.634 kb on + strand, within ABZR87_RS01110 at 230.634 kb on + strand, within ABZR87_RS01110 at 230.635 kb on - strand, within ABZR87_RS01110 at 230.901 kb on + strand, within ABZR87_RS01110 at 230.901 kb on + strand, within ABZR87_RS01110 at 230.901 kb on + strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.337 kb on + strand at 231.337 kb on + strand at 231.338 kb on - strand at 231.357 kb on + strand at 231.357 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.391 kb on - strand at 231.391 kb on - strand at 231.391 kb on - strand at 231.395 kb on + strand at 231.395 kb on + strand at 231.395 kb on + strand at 231.395 kb on + strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.476 kb on + strand at 231.477 kb on - strand at 231.576 kb on + strand, within ABZR87_RS01115 at 231.576 kb on + strand, within ABZR87_RS01115 at 231.633 kb on - strand, within ABZR87_RS01115 at 231.692 kb on + strand, within ABZR87_RS01115 at 231.692 kb on + strand, within ABZR87_RS01115 at 231.962 kb on + strand, within ABZR87_RS01115 at 231.962 kb on + strand, within ABZR87_RS01115 at 231.962 kb on + strand, within ABZR87_RS01115 at 231.962 kb on + strand, within ABZR87_RS01115 at 231.963 kb on - strand, within ABZR87_RS01115 at 231.963 kb on - strand, within ABZR87_RS01115 at 231.963 kb on - strand, within ABZR87_RS01115 at 232.149 kb on - strand, within ABZR87_RS01115 at 232.166 kb on + strand, within ABZR87_RS01115 at 232.166 kb on + strand, within ABZR87_RS01115 at 232.166 kb on + strand, within ABZR87_RS01115 at 232.167 kb on - strand, within ABZR87_RS01115 at 232.167 kb on - strand, within ABZR87_RS01115 at 232.167 kb on - strand, within ABZR87_RS01115 at 232.178 kb on + strand, within ABZR87_RS01115 at 232.179 kb on - strand, within ABZR87_RS01115 at 232.179 kb on - strand, within ABZR87_RS01115 at 232.179 kb on - strand, within ABZR87_RS01115
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 229,339 + ABZR87_RS01105 0.69 +0.8 229,339 + ABZR87_RS01105 0.69 +0.2 229,340 - ABZR87_RS01105 0.69 +0.5 229,408 + ABZR87_RS01105 0.74 -0.2 229,408 + ABZR87_RS01105 0.74 -0.5 229,409 - ABZR87_RS01105 0.74 +0.3 229,444 + ABZR87_RS01105 0.76 +1.1 229,444 + ABZR87_RS01105 0.76 -2.3 229,444 + ABZR87_RS01105 0.76 -1.0 229,444 + ABZR87_RS01105 0.76 +1.1 229,444 + ABZR87_RS01105 0.76 -0.2 229,444 + ABZR87_RS01105 0.76 -0.4 229,444 + ABZR87_RS01105 0.76 -0.4 229,444 + ABZR87_RS01105 0.76 -0.5 229,444 + ABZR87_RS01105 0.76 -1.0 229,444 + ABZR87_RS01105 0.76 -0.1 229,445 - ABZR87_RS01105 0.76 -1.8 229,445 - ABZR87_RS01105 0.76 +0.2 229,445 - ABZR87_RS01105 0.76 -0.5 229,445 - ABZR87_RS01105 0.76 +0.6 229,445 - ABZR87_RS01105 0.76 +0.5 229,445 - ABZR87_RS01105 0.76 +0.2 229,504 + ABZR87_RS01105 0.80 -2.2 229,504 + ABZR87_RS01105 0.80 -1.7 229,504 + ABZR87_RS01105 0.80 -1.0 229,504 + ABZR87_RS01105 0.80 -0.1 229,505 - ABZR87_RS01105 0.80 -0.8 229,505 - ABZR87_RS01105 0.80 -0.8 229,505 - ABZR87_RS01105 0.80 +0.4 229,505 - ABZR87_RS01105 0.80 +1.6 229,576 + ABZR87_RS01105 0.85 -0.1 229,576 + ABZR87_RS01105 0.85 +0.5 229,577 - ABZR87_RS01105 0.85 +0.4 229,863 + +0.8 229,863 + -0.4 229,863 + +1.0 229,864 - -0.6 229,864 - -1.1 229,865 + -0.5 229,865 + -0.5 229,865 + +0.4 229,865 + -1.3 229,866 - -1.5 229,866 - -1.6 229,866 - -0.8 229,866 - -0.9 229,866 - -1.1 229,894 - -0.2 229,894 - -1.8 229,977 - -0.4 229,977 - -0.8 230,031 - -0.3 230,137 + +0.6 230,137 + -0.1 230,137 + +1.3 230,138 - -1.6 230,138 - -1.1 230,138 - -1.1 230,138 - -1.1 230,138 - +0.0 230,151 - -0.2 230,151 - -0.5 230,151 - +0.1 230,289 + ABZR87_RS01110 0.10 -1.5 230,289 + ABZR87_RS01110 0.10 -2.5 230,289 + ABZR87_RS01110 0.10 -0.9 230,289 + ABZR87_RS01110 0.10 -2.3 230,289 + ABZR87_RS01110 0.10 -0.6 230,289 + ABZR87_RS01110 0.10 -1.2 230,289 + ABZR87_RS01110 0.10 -0.4 230,290 - ABZR87_RS01110 0.10 -0.2 230,290 - ABZR87_RS01110 0.10 -0.8 230,395 - ABZR87_RS01110 0.20 +0.6 230,460 + ABZR87_RS01110 0.26 -1.6 230,460 + ABZR87_RS01110 0.26 +0.3 230,460 + ABZR87_RS01110 0.26 +0.5 230,610 + ABZR87_RS01110 0.40 +0.7 230,610 + ABZR87_RS01110 0.40 -0.5 230,634 + ABZR87_RS01110 0.42 -0.3 230,634 + ABZR87_RS01110 0.42 +0.1 230,634 + ABZR87_RS01110 0.42 -0.6 230,635 - ABZR87_RS01110 0.42 -0.1 230,901 + ABZR87_RS01110 0.67 -0.5 230,901 + ABZR87_RS01110 0.67 -2.7 230,901 + ABZR87_RS01110 0.67 -1.3 230,902 - ABZR87_RS01110 0.67 -0.3 230,902 - ABZR87_RS01110 0.67 -1.4 230,902 - ABZR87_RS01110 0.67 -0.4 230,902 - ABZR87_RS01110 0.67 -1.9 230,902 - ABZR87_RS01110 0.67 -0.0 231,335 + +1.2 231,335 + +1.2 231,335 + -0.4 231,335 + +0.9 231,335 + +0.7 231,335 + -0.3 231,335 + +1.0 231,336 - -1.0 231,336 - -0.9 231,336 - -0.4 231,336 - -1.0 231,336 - -0.6 231,336 - +0.4 231,336 - +0.2 231,337 + -0.2 231,337 + -0.6 231,338 - -0.6 231,357 + +0.4 231,357 + -0.7 231,390 + +0.0 231,390 + +0.0 231,390 + -0.2 231,390 + -0.2 231,390 + -0.2 231,390 + -0.4 231,390 + +0.2 231,391 - +0.4 231,391 - -0.1 231,391 - +0.6 231,395 + +0.7 231,395 + -0.0 231,395 + -0.9 231,395 + -0.0 231,396 - -0.5 231,396 - -0.4 231,396 - -0.1 231,396 - -0.5 231,396 - -0.2 231,396 - +0.3 231,396 - -0.3 231,396 - +0.1 231,396 - +0.1 231,396 - +0.3 231,396 - +0.2 231,396 - +0.2 231,476 + -0.5 231,477 - +0.5 231,576 + ABZR87_RS01115 0.16 -0.3 231,576 + ABZR87_RS01115 0.16 -0.1 231,633 - ABZR87_RS01115 0.22 -0.3 231,692 + ABZR87_RS01115 0.29 -0.1 231,692 + ABZR87_RS01115 0.29 +0.8 231,962 + ABZR87_RS01115 0.59 +0.7 231,962 + ABZR87_RS01115 0.59 +0.0 231,962 + ABZR87_RS01115 0.59 +0.5 231,962 + ABZR87_RS01115 0.59 -0.2 231,963 - ABZR87_RS01115 0.59 +0.3 231,963 - ABZR87_RS01115 0.59 -0.4 231,963 - ABZR87_RS01115 0.59 -0.4 232,149 - ABZR87_RS01115 0.80 +0.5 232,166 + ABZR87_RS01115 0.81 -0.0 232,166 + ABZR87_RS01115 0.81 +0.9 232,166 + ABZR87_RS01115 0.81 +0.2 232,167 - ABZR87_RS01115 0.82 +0.3 232,167 - ABZR87_RS01115 0.82 +0.3 232,167 - ABZR87_RS01115 0.82 +0.0 232,178 + ABZR87_RS01115 0.83 -0.3 232,179 - ABZR87_RS01115 0.83 -0.0 232,179 - ABZR87_RS01115 0.83 +0.2 232,179 - ABZR87_RS01115 0.83 -0.5
Or see this region's nucleotide sequence