Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00920 and ABZR87_RS00925 are separated by 58 nucleotides ABZR87_RS00925 and ABZR87_RS00930 are separated by 51 nucleotides ABZR87_RS00930 and ABZR87_RS00935 are separated by 11 nucleotides
ABZR87_RS00920: ABZR87_RS00920 - AI-2E family transporter, at 183,326 to 184,396
_RS00920
ABZR87_RS00925: ABZR87_RS00925 - DnaA regulatory inactivator Hda, at 184,455 to 185,156
_RS00925
ABZR87_RS00930: ABZR87_RS00930 - HAD family phosphatase, at 185,208 to 185,882
_RS00930
ABZR87_RS00935: ABZR87_RS00935 - polynucleotide adenylyltransferase PcnB, at 185,894 to 187,456
_RS00935
Position (kb) 185
186 Strain fitness (log2 ratio) -2
-1
0
1 at 184.385 kb on + strand at 184.385 kb on + strand at 184.431 kb on + strand at 185.179 kb on + strand at 185.179 kb on + strand at 185.179 kb on + strand at 185.180 kb on - strand at 185.180 kb on - strand at 185.180 kb on - strand at 185.183 kb on + strand at 185.183 kb on + strand at 185.184 kb on - strand at 185.500 kb on - strand, within ABZR87_RS00930 at 185.880 kb on + strand at 185.881 kb on - strand at 185.881 kb on - strand at 185.881 kb on - strand at 185.881 kb on - strand at 186.146 kb on + strand, within ABZR87_RS00935 at 186.308 kb on + strand, within ABZR87_RS00935 at 186.309 kb on - strand, within ABZR87_RS00935 at 186.527 kb on + strand, within ABZR87_RS00935 at 186.527 kb on + strand, within ABZR87_RS00935 at 186.528 kb on - strand, within ABZR87_RS00935 at 186.528 kb on - strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.560 kb on + strand, within ABZR87_RS00935 at 186.560 kb on + strand, within ABZR87_RS00935 at 186.560 kb on + strand, within ABZR87_RS00935 at 186.561 kb on - strand, within ABZR87_RS00935
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 184,385 + +1.1 184,385 + +0.6 184,431 + +0.2 185,179 + +0.8 185,179 + -1.1 185,179 + +0.3 185,180 - -0.2 185,180 - +0.5 185,180 - +1.2 185,183 + +0.3 185,183 + +0.6 185,184 - +0.9 185,500 - ABZR87_RS00930 0.43 -0.8 185,880 + -0.7 185,881 - +0.5 185,881 - +0.7 185,881 - -1.0 185,881 - -0.2 186,146 + ABZR87_RS00935 0.16 +0.6 186,308 + ABZR87_RS00935 0.26 +1.2 186,309 - ABZR87_RS00935 0.27 +0.1 186,527 + ABZR87_RS00935 0.40 -1.9 186,527 + ABZR87_RS00935 0.40 -0.5 186,528 - ABZR87_RS00935 0.41 -0.6 186,528 - ABZR87_RS00935 0.41 +0.1 186,530 + ABZR87_RS00935 0.41 -1.2 186,530 + ABZR87_RS00935 0.41 -0.7 186,530 + ABZR87_RS00935 0.41 -1.7 186,530 + ABZR87_RS00935 0.41 -1.4 186,531 - ABZR87_RS00935 0.41 -0.7 186,531 - ABZR87_RS00935 0.41 -1.2 186,531 - ABZR87_RS00935 0.41 -0.7 186,531 - ABZR87_RS00935 0.41 +0.3 186,531 - ABZR87_RS00935 0.41 +0.3 186,531 - ABZR87_RS00935 0.41 -1.0 186,531 - ABZR87_RS00935 0.41 +0.4 186,531 - ABZR87_RS00935 0.41 -2.0 186,531 - ABZR87_RS00935 0.41 -0.7 186,531 - ABZR87_RS00935 0.41 -0.1 186,560 + ABZR87_RS00935 0.43 +0.0 186,560 + ABZR87_RS00935 0.43 +0.2 186,560 + ABZR87_RS00935 0.43 -0.9 186,561 - ABZR87_RS00935 0.43 -0.7
Or see this region's nucleotide sequence