Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00925

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00920 and ABZR87_RS00925 are separated by 58 nucleotidesABZR87_RS00925 and ABZR87_RS00930 are separated by 51 nucleotidesABZR87_RS00930 and ABZR87_RS00935 are separated by 11 nucleotides ABZR87_RS00920: ABZR87_RS00920 - AI-2E family transporter, at 183,326 to 184,396 _RS00920 ABZR87_RS00925: ABZR87_RS00925 - DnaA regulatory inactivator Hda, at 184,455 to 185,156 _RS00925 ABZR87_RS00930: ABZR87_RS00930 - HAD family phosphatase, at 185,208 to 185,882 _RS00930 ABZR87_RS00935: ABZR87_RS00935 - polynucleotide adenylyltransferase PcnB, at 185,894 to 187,456 _RS00935 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1 2at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.458 kb on + strand, within ABZR87_RS00920at 183.459 kb on - strand, within ABZR87_RS00920at 183.459 kb on - strand, within ABZR87_RS00920at 183.459 kb on - strand, within ABZR87_RS00920at 183.459 kb on - strand, within ABZR87_RS00920at 183.502 kb on - strand, within ABZR87_RS00920at 183.762 kb on + strand, within ABZR87_RS00920at 183.770 kb on + strand, within ABZR87_RS00920at 183.771 kb on - strand, within ABZR87_RS00920at 183.771 kb on - strand, within ABZR87_RS00920at 183.771 kb on - strand, within ABZR87_RS00920at 183.771 kb on - strand, within ABZR87_RS00920at 183.771 kb on - strand, within ABZR87_RS00920at 183.842 kb on + strand, within ABZR87_RS00920at 183.842 kb on + strand, within ABZR87_RS00920at 183.843 kb on - strand, within ABZR87_RS00920at 183.843 kb on - strand, within ABZR87_RS00920at 183.843 kb on - strand, within ABZR87_RS00920at 183.843 kb on - strand, within ABZR87_RS00920at 183.843 kb on - strand, within ABZR87_RS00920at 183.843 kb on - strand, within ABZR87_RS00920at 183.956 kb on + strand, within ABZR87_RS00920at 183.957 kb on - strand, within ABZR87_RS00920at 183.957 kb on - strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.998 kb on + strand, within ABZR87_RS00920at 183.999 kb on - strand, within ABZR87_RS00920at 183.999 kb on - strand, within ABZR87_RS00920at 183.999 kb on - strand, within ABZR87_RS00920at 183.999 kb on - strand, within ABZR87_RS00920at 183.999 kb on - strand, within ABZR87_RS00920at 184.001 kb on + strand, within ABZR87_RS00920at 184.001 kb on + strand, within ABZR87_RS00920at 184.002 kb on - strand, within ABZR87_RS00920at 184.002 kb on - strand, within ABZR87_RS00920at 184.002 kb on - strand, within ABZR87_RS00920at 184.002 kb on - strand, within ABZR87_RS00920at 184.002 kb on - strand, within ABZR87_RS00920at 184.002 kb on - strand, within ABZR87_RS00920at 184.082 kb on + strand, within ABZR87_RS00920at 184.082 kb on + strand, within ABZR87_RS00920at 184.082 kb on + strand, within ABZR87_RS00920at 184.082 kb on + strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.083 kb on - strand, within ABZR87_RS00920at 184.084 kb on + strand, within ABZR87_RS00920at 184.084 kb on + strand, within ABZR87_RS00920at 184.148 kb on + strand, within ABZR87_RS00920at 184.175 kb on + strand, within ABZR87_RS00920at 184.175 kb on + strand, within ABZR87_RS00920at 184.176 kb on - strand, within ABZR87_RS00920at 184.205 kb on + strand, within ABZR87_RS00920at 184.205 kb on + strand, within ABZR87_RS00920at 184.206 kb on - strand, within ABZR87_RS00920at 184.206 kb on - strand, within ABZR87_RS00920at 184.385 kb on + strandat 184.385 kb on + strandat 184.431 kb on + strandat 185.179 kb on + strandat 185.179 kb on + strandat 185.179 kb on + strandat 185.180 kb on - strandat 185.180 kb on - strandat 185.180 kb on - strandat 185.183 kb on + strandat 185.183 kb on + strandat 185.184 kb on - strandat 185.500 kb on - strand, within ABZR87_RS00930at 185.880 kb on + strandat 185.881 kb on - strandat 185.881 kb on - strandat 185.881 kb on - strandat 185.881 kb on - strandat 186.146 kb on + strand, within ABZR87_RS00935

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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183,458 + ABZR87_RS00920 0.12 +0.4
183,458 + ABZR87_RS00920 0.12 -1.5
183,458 + ABZR87_RS00920 0.12 +0.5
183,458 + ABZR87_RS00920 0.12 +1.1
183,458 + ABZR87_RS00920 0.12 +0.3
183,458 + ABZR87_RS00920 0.12 -0.2
183,458 + ABZR87_RS00920 0.12 +0.2
183,458 + ABZR87_RS00920 0.12 +0.8
183,458 + ABZR87_RS00920 0.12 +0.8
183,458 + ABZR87_RS00920 0.12 -0.8
183,459 - ABZR87_RS00920 0.12 -0.2
183,459 - ABZR87_RS00920 0.12 +0.6
183,459 - ABZR87_RS00920 0.12 +0.3
183,459 - ABZR87_RS00920 0.12 +0.4
183,502 - ABZR87_RS00920 0.16 -0.5
183,762 + ABZR87_RS00920 0.41 -0.9
183,770 + ABZR87_RS00920 0.41 +0.6
183,771 - ABZR87_RS00920 0.42 -0.2
183,771 - ABZR87_RS00920 0.42 +1.0
183,771 - ABZR87_RS00920 0.42 +0.4
183,771 - ABZR87_RS00920 0.42 -0.4
183,771 - ABZR87_RS00920 0.42 +1.1
183,842 + ABZR87_RS00920 0.48 +2.1
183,842 + ABZR87_RS00920 0.48 -0.6
183,843 - ABZR87_RS00920 0.48 +1.1
183,843 - ABZR87_RS00920 0.48 -0.9
183,843 - ABZR87_RS00920 0.48 -1.1
183,843 - ABZR87_RS00920 0.48 -0.3
183,843 - ABZR87_RS00920 0.48 -0.1
183,843 - ABZR87_RS00920 0.48 -0.7
183,956 + ABZR87_RS00920 0.59 +0.5
183,957 - ABZR87_RS00920 0.59 +0.4
183,957 - ABZR87_RS00920 0.59 +0.1
183,998 + ABZR87_RS00920 0.63 -0.6
183,998 + ABZR87_RS00920 0.63 -0.2
183,998 + ABZR87_RS00920 0.63 -0.2
183,998 + ABZR87_RS00920 0.63 +0.8
183,998 + ABZR87_RS00920 0.63 +0.1
183,998 + ABZR87_RS00920 0.63 +0.8
183,998 + ABZR87_RS00920 0.63 -0.2
183,998 + ABZR87_RS00920 0.63 +1.2
183,998 + ABZR87_RS00920 0.63 +0.2
183,999 - ABZR87_RS00920 0.63 -0.6
183,999 - ABZR87_RS00920 0.63 +0.2
183,999 - ABZR87_RS00920 0.63 +0.4
183,999 - ABZR87_RS00920 0.63 -0.2
183,999 - ABZR87_RS00920 0.63 +0.8
184,001 + ABZR87_RS00920 0.63 -0.9
184,001 + ABZR87_RS00920 0.63 +0.3
184,002 - ABZR87_RS00920 0.63 -0.3
184,002 - ABZR87_RS00920 0.63 +0.5
184,002 - ABZR87_RS00920 0.63 -0.4
184,002 - ABZR87_RS00920 0.63 +1.0
184,002 - ABZR87_RS00920 0.63 -0.8
184,002 - ABZR87_RS00920 0.63 +0.2
184,082 + ABZR87_RS00920 0.71 -0.4
184,082 + ABZR87_RS00920 0.71 -0.5
184,082 + ABZR87_RS00920 0.71 +1.6
184,082 + ABZR87_RS00920 0.71 -0.5
184,083 - ABZR87_RS00920 0.71 +0.5
184,083 - ABZR87_RS00920 0.71 +0.3
184,083 - ABZR87_RS00920 0.71 +0.3
184,083 - ABZR87_RS00920 0.71 -0.5
184,083 - ABZR87_RS00920 0.71 -1.6
184,083 - ABZR87_RS00920 0.71 +0.1
184,083 - ABZR87_RS00920 0.71 -0.2
184,083 - ABZR87_RS00920 0.71 -0.2
184,083 - ABZR87_RS00920 0.71 -0.6
184,084 + ABZR87_RS00920 0.71 +1.0
184,084 + ABZR87_RS00920 0.71 -0.1
184,148 + ABZR87_RS00920 0.77 +1.8
184,175 + ABZR87_RS00920 0.79 +0.1
184,175 + ABZR87_RS00920 0.79 -0.4
184,176 - ABZR87_RS00920 0.79 +0.1
184,205 + ABZR87_RS00920 0.82 -0.1
184,205 + ABZR87_RS00920 0.82 +0.0
184,206 - ABZR87_RS00920 0.82 -1.9
184,206 - ABZR87_RS00920 0.82 -0.5
184,385 + +1.1
184,385 + +0.6
184,431 + +0.2
185,179 + +0.8
185,179 + -1.1
185,179 + +0.3
185,180 - -0.2
185,180 - +0.5
185,180 - +1.2
185,183 + +0.3
185,183 + +0.6
185,184 - +0.9
185,500 - ABZR87_RS00930 0.43 -0.8
185,880 + -0.7
185,881 - +0.5
185,881 - +0.7
185,881 - -1.0
185,881 - -0.2
186,146 + ABZR87_RS00935 0.16 +0.6

Or see this region's nucleotide sequence