Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00910

Experiment: Dictyostellum sp.mixed culture-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS00900 and ABZR87_RS00905 overlap by 4 nucleotidesABZR87_RS00905 and ABZR87_RS00910 are separated by 38 nucleotidesABZR87_RS00910 and ABZR87_RS00915 are separated by 72 nucleotides ABZR87_RS00900: ABZR87_RS00900 - bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada, at 180,182 to 181,267 _RS00900 ABZR87_RS00905: ABZR87_RS00905 - Ada metal-binding domain-containing protein, at 181,264 to 181,545 _RS00905 ABZR87_RS00910: ABZR87_RS00910 - hypothetical protein, at 181,584 to 182,033 _RS00910 ABZR87_RS00915: ABZR87_RS00915 - phosphoribosylformylglycinamidine cyclo-ligase, at 182,106 to 183,161 _RS00915 Position (kb) 181 182 183Strain fitness (log2 ratio) -2 -1 0 1 2at 180.596 kb on + strand, within ABZR87_RS00900at 180.596 kb on + strand, within ABZR87_RS00900at 180.668 kb on + strand, within ABZR87_RS00900at 180.668 kb on + strand, within ABZR87_RS00900at 180.669 kb on - strand, within ABZR87_RS00900at 180.669 kb on - strand, within ABZR87_RS00900at 180.669 kb on - strand, within ABZR87_RS00900at 180.669 kb on - strand, within ABZR87_RS00900at 180.701 kb on + strand, within ABZR87_RS00900at 180.701 kb on + strand, within ABZR87_RS00900at 180.701 kb on + strand, within ABZR87_RS00900at 180.701 kb on + strand, within ABZR87_RS00900at 180.702 kb on - strand, within ABZR87_RS00900at 180.702 kb on - strand, within ABZR87_RS00900at 180.895 kb on - strand, within ABZR87_RS00900at 180.990 kb on + strand, within ABZR87_RS00900at 180.990 kb on + strand, within ABZR87_RS00900at 180.991 kb on - strand, within ABZR87_RS00900at 180.991 kb on - strand, within ABZR87_RS00900at 181.060 kb on + strand, within ABZR87_RS00900at 181.073 kb on + strand, within ABZR87_RS00900at 181.321 kb on + strand, within ABZR87_RS00905at 181.321 kb on + strand, within ABZR87_RS00905at 181.322 kb on - strand, within ABZR87_RS00905at 181.322 kb on - strand, within ABZR87_RS00905at 181.322 kb on - strand, within ABZR87_RS00905at 181.322 kb on - strand, within ABZR87_RS00905at 181.372 kb on + strand, within ABZR87_RS00905at 181.372 kb on + strand, within ABZR87_RS00905at 181.372 kb on + strand, within ABZR87_RS00905at 181.373 kb on - strand, within ABZR87_RS00905at 181.423 kb on + strand, within ABZR87_RS00905at 181.423 kb on + strand, within ABZR87_RS00905at 181.423 kb on + strand, within ABZR87_RS00905at 181.423 kb on + strand, within ABZR87_RS00905at 181.424 kb on - strand, within ABZR87_RS00905at 181.424 kb on - strand, within ABZR87_RS00905at 181.424 kb on - strand, within ABZR87_RS00905at 181.440 kb on - strand, within ABZR87_RS00905at 181.440 kb on - strand, within ABZR87_RS00905at 181.510 kb on + strand, within ABZR87_RS00905at 181.510 kb on + strand, within ABZR87_RS00905at 181.510 kb on + strand, within ABZR87_RS00905at 181.510 kb on + strand, within ABZR87_RS00905at 181.510 kb on + strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.511 kb on - strand, within ABZR87_RS00905at 181.819 kb on - strand, within ABZR87_RS00910at 181.819 kb on - strand, within ABZR87_RS00910at 181.819 kb on - strand, within ABZR87_RS00910at 182.016 kb on + strandat 182.016 kb on + strandat 182.017 kb on - strandat 182.031 kb on + strandat 182.031 kb on + strandat 182.032 kb on - strandat 182.032 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
remove
180,596 + ABZR87_RS00900 0.38 +0.4
180,596 + ABZR87_RS00900 0.38 +0.2
180,668 + ABZR87_RS00900 0.45 +0.9
180,668 + ABZR87_RS00900 0.45 -0.2
180,669 - ABZR87_RS00900 0.45 +0.4
180,669 - ABZR87_RS00900 0.45 +0.2
180,669 - ABZR87_RS00900 0.45 +0.2
180,669 - ABZR87_RS00900 0.45 -1.3
180,701 + ABZR87_RS00900 0.48 -0.0
180,701 + ABZR87_RS00900 0.48 +0.7
180,701 + ABZR87_RS00900 0.48 +0.0
180,701 + ABZR87_RS00900 0.48 +0.0
180,702 - ABZR87_RS00900 0.48 +0.0
180,702 - ABZR87_RS00900 0.48 -0.2
180,895 - ABZR87_RS00900 0.66 +0.1
180,990 + ABZR87_RS00900 0.74 +0.3
180,990 + ABZR87_RS00900 0.74 -0.9
180,991 - ABZR87_RS00900 0.74 -0.2
180,991 - ABZR87_RS00900 0.74 -0.3
181,060 + ABZR87_RS00900 0.81 -0.8
181,073 + ABZR87_RS00900 0.82 +0.8
181,321 + ABZR87_RS00905 0.20 +0.0
181,321 + ABZR87_RS00905 0.20 +0.8
181,322 - ABZR87_RS00905 0.21 +0.2
181,322 - ABZR87_RS00905 0.21 +0.0
181,322 - ABZR87_RS00905 0.21 -0.4
181,322 - ABZR87_RS00905 0.21 -0.2
181,372 + ABZR87_RS00905 0.38 +0.8
181,372 + ABZR87_RS00905 0.38 -0.4
181,372 + ABZR87_RS00905 0.38 +0.1
181,373 - ABZR87_RS00905 0.39 +0.1
181,423 + ABZR87_RS00905 0.56 -0.2
181,423 + ABZR87_RS00905 0.56 -0.3
181,423 + ABZR87_RS00905 0.56 -0.7
181,423 + ABZR87_RS00905 0.56 -0.5
181,424 - ABZR87_RS00905 0.57 +0.4
181,424 - ABZR87_RS00905 0.57 +0.3
181,424 - ABZR87_RS00905 0.57 +0.4
181,440 - ABZR87_RS00905 0.62 -0.5
181,440 - ABZR87_RS00905 0.62 +0.5
181,510 + ABZR87_RS00905 0.87 -1.8
181,510 + ABZR87_RS00905 0.87 +1.2
181,510 + ABZR87_RS00905 0.87 +0.4
181,510 + ABZR87_RS00905 0.87 +0.2
181,510 + ABZR87_RS00905 0.87 +1.8
181,511 - ABZR87_RS00905 0.88 -1.0
181,511 - ABZR87_RS00905 0.88 +0.2
181,511 - ABZR87_RS00905 0.88 +0.0
181,511 - ABZR87_RS00905 0.88 +0.2
181,511 - ABZR87_RS00905 0.88 +0.4
181,511 - ABZR87_RS00905 0.88 -0.4
181,511 - ABZR87_RS00905 0.88 -0.2
181,511 - ABZR87_RS00905 0.88 +0.5
181,511 - ABZR87_RS00905 0.88 +0.2
181,819 - ABZR87_RS00910 0.52 -0.5
181,819 - ABZR87_RS00910 0.52 -0.6
181,819 - ABZR87_RS00910 0.52 -0.5
182,016 + +0.4
182,016 + -0.7
182,017 - +0.3
182,031 + -0.6
182,031 + -0.3
182,032 - -0.6
182,032 - -0.4

Or see this region's nucleotide sequence