Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2512

Experiment: MoLS4 with Pantothenic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2510 and DVU2511 are separated by 14 nucleotidesDVU2511 and mraW are separated by 2 nucleotidesmraW and mraZ are separated by 13 nucleotidesmraZ and pyk are separated by 153 nucleotides DVU2510: DVU2510 - penicillin-binding protein (TIGR), at 2,623,154 to 2,625,226 DVU2510 DVU2511: DVU2511 - hypothetical protein (TIGR), at 2,625,241 to 2,625,528 DVU2511 DVU2512: mraW - S-adenosyl-methyltransferase MraW (TIGR), at 2,625,531 to 2,626,502 mraW DVU2513: mraZ - conserved hypothetical protein TIGR00242 (TIGR), at 2,626,516 to 2,626,965 mraZ DVU2514: pyk - pyruvate kinase (TIGR), at 2,627,119 to 2,628,528 pyk Position (kb) 2625 2626 2627Strain fitness (log2 ratio) -2 -1 0 1 2at 2625.134 kb on - strandat 2625.228 kb on + strandat 2625.528 kb on + strandat 2625.536 kb on - strandat 2625.536 kb on - strandat 2625.536 kb on - strandat 2626.001 kb on - strand, within mraWat 2626.211 kb on - strand, within mraWat 2626.215 kb on - strand, within mraWat 2626.333 kb on - strand, within mraWat 2626.568 kb on - strand, within mraZat 2626.641 kb on - strand, within mraZat 2626.738 kb on - strand, within mraZat 2626.741 kb on - strand, within mraZat 2626.777 kb on - strand, within mraZat 2626.810 kb on + strand, within mraZat 2626.882 kb on - strand, within mraZat 2627.037 kb on + strandat 2627.037 kb on + strandat 2627.042 kb on + strandat 2627.045 kb on - strandat 2627.253 kb on + strandat 2627.261 kb on - strand, within pykat 2627.285 kb on - strand, within pykat 2627.314 kb on - strand, within pykat 2627.381 kb on - strand, within pykat 2627.382 kb on - strand, within pykat 2627.382 kb on - strand, within pykat 2627.432 kb on + strand, within pykat 2627.432 kb on + strand, within pykat 2627.477 kb on + strand, within pyk

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Pantothenic
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2,625,134 - +1.2
2,625,228 + -0.3
2,625,528 + +1.1
2,625,536 - +0.2
2,625,536 - +0.1
2,625,536 - +0.1
2,626,001 - mraW DVU2512 0.48 +0.6
2,626,211 - mraW DVU2512 0.70 +0.5
2,626,215 - mraW DVU2512 0.70 +1.9
2,626,333 - mraW DVU2512 0.83 -0.9
2,626,568 - mraZ DVU2513 0.12 -2.2
2,626,641 - mraZ DVU2513 0.28 +0.9
2,626,738 - mraZ DVU2513 0.49 -0.2
2,626,741 - mraZ DVU2513 0.50 -0.2
2,626,777 - mraZ DVU2513 0.58 +0.3
2,626,810 + mraZ DVU2513 0.65 -1.0
2,626,882 - mraZ DVU2513 0.81 -0.5
2,627,037 + +0.8
2,627,037 + -0.1
2,627,042 + -1.0
2,627,045 - -0.0
2,627,253 + -0.7
2,627,261 - pyk DVU2514 0.10 -0.1
2,627,285 - pyk DVU2514 0.12 +1.4
2,627,314 - pyk DVU2514 0.14 -0.4
2,627,381 - pyk DVU2514 0.19 -1.2
2,627,382 - pyk DVU2514 0.19 +0.3
2,627,382 - pyk DVU2514 0.19 -1.3
2,627,432 + pyk DVU2514 0.22 -0.1
2,627,432 + pyk DVU2514 0.22 -0.8
2,627,477 + pyk DVU2514 0.25 -0.7

Or see this region's nucleotide sequence