Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28470

Experiment: Glucose (C) and Ammonium chloride (N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
6,333,403	+		PFLU_RS28465	0.39	-2.8
6,333,403	+		PFLU_RS28465	0.39	-2.2
6,333,473	-		PFLU_RS28465	0.44	+1.0
6,333,553	+		PFLU_RS28465	0.49	+2.5
6,333,553	+		PFLU_RS28465	0.49	+2.2
6,333,553	+		PFLU_RS28465	0.49	-2.7
6,333,553	+		PFLU_RS28465	0.49	+1.2
6,333,553	+		PFLU_RS28465	0.49	-0.7
6,333,553	+		PFLU_RS28465	0.49	+1.5
6,333,553	+		PFLU_RS28465	0.49	-0.7
6,333,553	+		PFLU_RS28465	0.49	+2.5
6,333,553	+		PFLU_RS28465	0.49	+2.1
6,333,553	+		PFLU_RS28465	0.49	-0.7
6,333,554	-		PFLU_RS28465	0.49	-0.2
6,333,554	-		PFLU_RS28465	0.49	+0.2
6,333,554	-		PFLU_RS28465	0.49	+2.1
6,333,554	-		PFLU_RS28465	0.49	-0.4
6,333,554	-		PFLU_RS28465	0.49	+0.8
6,333,554	-		PFLU_RS28465	0.49	-1.1
6,333,554	-		PFLU_RS28465	0.49	-2.4
6,333,554	-		PFLU_RS28465	0.49	-1.0
6,333,554	-		PFLU_RS28465	0.49	+0.4
6,333,554	-		PFLU_RS28465	0.49	+1.3
6,333,776	-		PFLU_RS28465	0.64	-0.8
6,333,776	-		PFLU_RS28465	0.64	-2.8
6,333,868	+		PFLU_RS28465	0.70	+1.1
6,333,868	+		PFLU_RS28465	0.70	+1.9
6,333,878	-		PFLU_RS28465	0.71	-1.6
6,333,878	-		PFLU_RS28465	0.71	-1.4
6,333,902	+		PFLU_RS28465	0.72	+1.0
6,333,988	+		PFLU_RS28465	0.78	-1.0
6,333,988	+		PFLU_RS28465	0.78	-1.1
6,333,989	-		PFLU_RS28465	0.78	-2.1
6,334,111	+		PFLU_RS28465	0.86	-1.8
6,334,111	+		PFLU_RS28465	0.86	-2.3
6,334,111	+		PFLU_RS28465	0.86	-1.6
6,334,111	+		PFLU_RS28465	0.86	+2.5
6,334,111	+		PFLU_RS28465	0.86	-0.3
6,334,111	+		PFLU_RS28465	0.86	-0.5
6,334,111	+		PFLU_RS28465	0.86	+1.8
6,334,111	+		PFLU_RS28465	0.86	-1.9
6,334,111	+		PFLU_RS28465	0.86	+0.8
6,334,111	+		PFLU_RS28465	0.86	-1.5
6,334,111	+		PFLU_RS28465	0.86	-1.7
6,334,111	+		PFLU_RS28465	0.86	-1.1
6,334,111	+		PFLU_RS28465	0.86	+2.3
6,334,111	+		PFLU_RS28465	0.86	-1.0
6,334,112	-		PFLU_RS28465	0.86	+1.3
6,334,112	-		PFLU_RS28465	0.86	-1.2
6,334,112	-		PFLU_RS28465	0.86	-0.5
6,334,112	-		PFLU_RS28465	0.86	+1.4
6,334,112	-		PFLU_RS28465	0.86	-1.5
6,334,112	-		PFLU_RS28465	0.86	-0.7
6,334,112	-		PFLU_RS28465	0.86	-0.5
6,334,112	-		PFLU_RS28465	0.86	-2.1
6,334,112	-		PFLU_RS28465	0.86	-1.0
6,334,112	-		PFLU_RS28465	0.86	+3.2
6,334,112	-		PFLU_RS28465	0.86	-0.4
6,334,112	-		PFLU_RS28465	0.86	-1.6
6,334,112	-		PFLU_RS28465	0.86	+2.1
6,334,112	-		PFLU_RS28465	0.86	-0.1
6,334,113	+		PFLU_RS28465	0.86	+0.6
6,334,114	-		PFLU_RS28465	0.87	-0.6
6,334,129	+		PFLU_RS28465	0.88	+2.1
6,334,129	+		PFLU_RS28465	0.88	-1.5
6,334,129	+		PFLU_RS28465	0.88	-1.1
6,334,129	+		PFLU_RS28465	0.88	-0.8
6,334,129	+		PFLU_RS28465	0.88	-2.3
6,334,129	+		PFLU_RS28465	0.88	+1.8
6,334,130	-		PFLU_RS28465	0.88	+0.8
6,334,130	-		PFLU_RS28465	0.88	-1.0
6,334,130	-		PFLU_RS28465	0.88	-1.1
6,334,130	-		PFLU_RS28465	0.88	-1.5
6,334,130	-		PFLU_RS28465	0.88	+0.8
6,334,169	+				+0.3
6,334,169	+				+0.8
6,334,169	+				+0.2
6,334,169	+				-0.4
6,334,169	+				-0.8
6,334,169	+				-0.3
6,334,169	+				-2.7
6,334,169	+				-3.0
6,334,169	+				-0.2
6,334,169	+				+0.5
6,334,170	-				-0.3
6,334,170	-				-1.1
6,334,170	-				-2.1
6,334,170	-				-2.4
6,334,170	-				-1.8
6,334,170	-				-1.2
6,334,170	-				-0.5
6,334,170	-				-0.8
6,334,170	-				+0.8
6,334,170	-				-0.2
6,334,276	-				+0.0
6,334,313	-				-0.8
6,334,358	+				+0.0
6,334,358	+				+0.8
6,334,359	-				-0.7
6,334,359	-				-1.4
6,334,429	+		PFLU_RS28470	0.19	+1.3
6,334,429	+		PFLU_RS28470	0.19	+1.3
6,334,488	+		PFLU_RS28470	0.28	+0.3
6,334,488	+		PFLU_RS28470	0.28	+0.0
6,334,488	+		PFLU_RS28470	0.28	-1.0
6,334,489	-		PFLU_RS28470	0.28	+0.3
6,334,489	-		PFLU_RS28470	0.28	-0.8
6,334,489	-		PFLU_RS28470	0.28	+2.3
6,334,704	+		PFLU_RS28470	0.63	-0.5
6,334,704	+		PFLU_RS28470	0.63	+0.3
6,334,705	-		PFLU_RS28470	0.63	-1.0
6,334,705	-		PFLU_RS28470	0.63	-0.2
6,334,705	-		PFLU_RS28470	0.63	+1.7
6,334,806	+		PFLU_RS28470	0.80	-0.2
6,334,806	+		PFLU_RS28470	0.80	+0.3
6,334,806	+		PFLU_RS28470	0.80	+0.3
6,334,806	+		PFLU_RS28470	0.80	+1.3
6,334,806	+		PFLU_RS28470	0.80	+0.3
6,334,806	+		PFLU_RS28470	0.80	-1.0
6,334,806	+		PFLU_RS28470	0.80	-0.5
6,334,807	-		PFLU_RS28470	0.80	-0.5
6,334,807	-		PFLU_RS28470	0.80	+0.8
6,334,807	-		PFLU_RS28470	0.80	-0.2
6,334,807	-		PFLU_RS28470	0.80	+0.0
6,334,807	-		PFLU_RS28470	0.80	-0.5
6,334,807	-		PFLU_RS28470	0.80	-1.0
6,334,832	+		PFLU_RS28470	0.84	+0.8
6,334,832	+		PFLU_RS28470	0.84	+0.8
6,334,833	-		PFLU_RS28470	0.84	-1.4
6,334,890	+				+0.3
6,334,890	+				+1.3
6,334,890	+				-0.2
6,334,890	+				+0.8
6,334,890	+				+1.8
6,334,890	+				-0.5
6,334,890	+				+0.8
6,334,890	+				+2.3
6,334,890	+				+1.3
6,334,890	+				-1.4
6,334,891	-				+0.8
6,334,891	-				+0.8
6,334,891	-				+0.0
6,334,891	-				+0.0
6,334,891	-				+0.3
6,334,891	-				+0.0
6,334,891	-				+0.3
6,334,891	-				+1.8
6,334,891	-				+2.3
6,334,891	-				-1.1
6,334,891	-				-0.5
6,334,891	-				+2.8
6,334,893	+				-1.8
6,334,893	+				-0.2
6,334,894	-				+0.3
6,334,894	-				+0.3
6,334,894	-				-0.5
6,335,022	+				+0.0
6,335,022	+				+0.7
6,335,022	-				-1.3
6,335,023	-				-0.3
6,335,023	-				-0.7
6,335,050	-				-1.0
6,335,339	+		PFLU_RS28475	0.23	+0.5
6,335,339	+		PFLU_RS28475	0.23	-1.7
6,335,340	-		PFLU_RS28475	0.23	+0.0
6,335,340	-		PFLU_RS28475	0.23	-1.0
6,335,340	-		PFLU_RS28475	0.23	-1.9
6,335,340	-		PFLU_RS28475	0.23	-1.7
6,335,441	+		PFLU_RS28475	0.33	+0.9
6,335,441	+		PFLU_RS28475	0.33	+2.1
6,335,441	+		PFLU_RS28475	0.33	+0.1
6,335,441	+		PFLU_RS28475	0.33	+0.1
6,335,441	+		PFLU_RS28475	0.33	-1.6
6,335,441	+		PFLU_RS28475	0.33	-0.2
6,335,441	+		PFLU_RS28475	0.33	+0.8
6,335,441	+		PFLU_RS28475	0.33	-1.0
6,335,441	+		PFLU_RS28475	0.33	-0.2
6,335,442	-		PFLU_RS28475	0.33	-0.2
6,335,442	-		PFLU_RS28475	0.33	-0.8
6,335,442	-		PFLU_RS28475	0.33	-1.5
6,335,516	+		PFLU_RS28475	0.41	+1.0
6,335,516	+		PFLU_RS28475	0.41	-2.1
6,335,516	+		PFLU_RS28475	0.41	+0.1
6,335,516	+		PFLU_RS28475	0.41	-0.2
6,335,516	+		PFLU_RS28475	0.41	-2.6
6,335,517	-		PFLU_RS28475	0.41	+2.2
6,335,517	-		PFLU_RS28475	0.41	+0.8
6,335,517	-		PFLU_RS28475	0.41	+0.3
6,335,528	+		PFLU_RS28475	0.42	-0.5
6,335,529	-		PFLU_RS28475	0.42	+0.2
6,335,669	+		PFLU_RS28475	0.56	-1.8
6,335,702	+		PFLU_RS28475	0.60	+0.8
6,335,702	+		PFLU_RS28475	0.60	-1.5
6,335,702	+		PFLU_RS28475	0.60	+1.0
6,335,702	+		PFLU_RS28475	0.60	-1.1
6,335,702	+		PFLU_RS28475	0.60	-2.5
6,335,702	+		PFLU_RS28475	0.60	+1.5
6,335,702	+		PFLU_RS28475	0.60	-2.4
6,335,702	+		PFLU_RS28475	0.60	+0.5
6,335,702	+		PFLU_RS28475	0.60	-0.5
6,335,702	+		PFLU_RS28475	0.60	+1.8
6,335,702	+		PFLU_RS28475	0.60	+0.3
6,335,702	+		PFLU_RS28475	0.60	-0.3
6,335,702	+		PFLU_RS28475	0.60	-2.0
6,335,703	-		PFLU_RS28475	0.60	-0.8
6,335,703	-		PFLU_RS28475	0.60	-2.1
6,335,703	-		PFLU_RS28475	0.60	-2.7
6,335,703	-		PFLU_RS28475	0.60	+1.3
6,335,703	-		PFLU_RS28475	0.60	-2.2
6,335,703	-		PFLU_RS28475	0.60	-3.2
6,335,703	-		PFLU_RS28475	0.60	+1.5
6,335,703	-		PFLU_RS28475	0.60	+1.3
6,335,703	-		PFLU_RS28475	0.60	+0.2
6,335,703	-		PFLU_RS28475	0.60	+2.5
6,335,703	-		PFLU_RS28475	0.60	+0.5
6,335,703	-		PFLU_RS28475	0.60	+0.9
6,335,703	-		PFLU_RS28475	0.60	-0.7
6,335,703	-		PFLU_RS28475	0.60	+1.7
6,335,703	-		PFLU_RS28475	0.60	+0.3
6,335,703	-		PFLU_RS28475	0.60	+1.3
6,335,703	-		PFLU_RS28475	0.60	+2.0
6,335,703	-		PFLU_RS28475	0.60	+0.0
6,335,705	-		PFLU_RS28475	0.60	-2.4
6,335,730	+		PFLU_RS28475	0.62	+2.6
6,335,858	+		PFLU_RS28475	0.75	+1.8
6,335,858	+		PFLU_RS28475	0.75	+2.0
6,335,858	+		PFLU_RS28475	0.75	+1.3
6,335,858	+		PFLU_RS28475	0.75	-1.5
6,335,858	+		PFLU_RS28475	0.75	-1.6
6,335,858	+		PFLU_RS28475	0.75	-1.4
6,335,858	+		PFLU_RS28475	0.75	-0.2
6,335,858	+		PFLU_RS28475	0.75	-0.2
6,335,858	+		PFLU_RS28475	0.75	+2.3
6,335,858	+		PFLU_RS28475	0.75	-2.8
6,335,858	+		PFLU_RS28475	0.75	+1.9
6,335,858	+		PFLU_RS28475	0.75	+2.4
6,335,858	+		PFLU_RS28475	0.75	-0.1
6,335,858	+		PFLU_RS28475	0.75	+0.7
6,335,858	+		PFLU_RS28475	0.75	+2.5
6,335,859	-		PFLU_RS28475	0.75	+0.3
6,335,859	-		PFLU_RS28475	0.75	+2.7
6,335,859	-		PFLU_RS28475	0.75	+0.8
6,335,859	-		PFLU_RS28475	0.75	-0.5
6,335,859	-		PFLU_RS28475	0.75	+0.8
6,335,859	-		PFLU_RS28475	0.75	-1.8
6,335,859	-		PFLU_RS28475	0.75	-0.1
6,335,859	-		PFLU_RS28475	0.75	+1.7
6,335,859	-		PFLU_RS28475	0.75	+1.3
6,335,862	-		PFLU_RS28475	0.76	+0.9
6,335,862	-		PFLU_RS28475	0.76	-0.1
6,335,883	-		PFLU_RS28475	0.78	-0.2
6,335,885	+		PFLU_RS28475	0.78	-1.6
6,335,885	+		PFLU_RS28475	0.78	+2.1
6,335,885	+		PFLU_RS28475	0.78	-0.8
6,335,885	+		PFLU_RS28475	0.78	+1.8
6,335,885	+		PFLU_RS28475	0.78	-2.0
6,335,885	+		PFLU_RS28475	0.78	-1.2
6,335,886	-		PFLU_RS28475	0.78	-0.2
6,335,886	-		PFLU_RS28475	0.78	-0.8
6,335,886	-		PFLU_RS28475	0.78	-0.2
6,335,886	-		PFLU_RS28475	0.78	+2.2
6,335,886	-		PFLU_RS28475	0.78	+3.1
6,335,886	-		PFLU_RS28475	0.78	+2.4
6,335,886	-		PFLU_RS28475	0.78	+1.8
6,335,886	-		PFLU_RS28475	0.78	-0.5