Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05405

Experiment: Glucose (C) and Ammonium chloride (N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
1,205,960	+				-0.7
1,205,960	+				+2.5
1,205,961	-				+1.7
1,205,962	+				-0.7
1,205,981	+				+0.2
1,205,981	+				-1.1
1,205,981	+				-0.7
1,205,982	-				-0.4
1,205,982	-				+1.4
1,205,982	-				+0.9
1,205,982	-				-0.8
1,206,012	-				-1.5
1,206,093	+		PFLU_RS05395	0.31	+0.9
1,206,093	+		PFLU_RS05395	0.31	-0.3
1,206,093	+		PFLU_RS05395	0.31	-2.4
1,206,094	-		PFLU_RS05395	0.31	-1.5
1,206,094	-		PFLU_RS05395	0.31	+2.2
1,206,094	-		PFLU_RS05395	0.31	-1.4
1,206,094	-		PFLU_RS05395	0.31	+0.0
1,206,167	+		PFLU_RS05395	0.62	+1.6
1,206,167	+		PFLU_RS05395	0.62	-3.2
1,206,167	+		PFLU_RS05395	0.62	-0.7
1,206,168	-		PFLU_RS05395	0.63	-0.3
1,206,216	+		PFLU_RS05395	0.83	-0.4
1,206,216	+		PFLU_RS05395	0.83	-0.7
1,206,216	+		PFLU_RS05395	0.83	-0.9
1,206,216	+		PFLU_RS05395	0.83	-1.3
1,206,216	+		PFLU_RS05395	0.83	-1.9
1,206,217	-		PFLU_RS05395	0.84	+3.2
1,206,217	-		PFLU_RS05395	0.84	-0.2
1,206,217	-		PFLU_RS05395	0.84	-2.6
1,206,319	+				-0.2
1,206,319	+				+0.0
1,206,320	-				+1.0
1,206,320	-				+1.4
1,206,320	-				+0.6
1,206,330	-		PFLU_RS05400	0.11	-2.3
1,206,433	+		PFLU_RS05400	0.28	+1.8
1,206,433	+		PFLU_RS05400	0.28	-2.5
1,206,433	+		PFLU_RS05400	0.28	-2.2
1,206,433	+		PFLU_RS05400	0.28	+0.6
1,206,433	+		PFLU_RS05400	0.28	+0.0
1,206,434	-		PFLU_RS05400	0.28	-1.1
1,206,434	-		PFLU_RS05400	0.28	+0.2
1,206,434	-		PFLU_RS05400	0.28	+1.5
1,206,434	-		PFLU_RS05400	0.28	-0.9
1,206,434	-		PFLU_RS05400	0.28	+0.3
1,206,434	-		PFLU_RS05400	0.28	+0.1
1,206,434	-		PFLU_RS05400	0.28	-1.7
1,206,434	-		PFLU_RS05400	0.28	-0.9
1,206,434	-		PFLU_RS05400	0.28	-2.2
1,206,434	-		PFLU_RS05400	0.28	-1.8
1,206,532	+		PFLU_RS05400	0.44	+1.3
1,206,532	+		PFLU_RS05400	0.44	-2.2
1,206,533	-		PFLU_RS05400	0.44	-1.2
1,206,533	-		PFLU_RS05400	0.44	-0.4
1,206,533	-		PFLU_RS05400	0.44	-0.7
1,206,533	-		PFLU_RS05400	0.44	+0.1
1,206,533	-		PFLU_RS05400	0.44	+0.7
1,206,545	+		PFLU_RS05400	0.46	-0.9
1,206,546	-		PFLU_RS05400	0.46	+1.1
1,206,628	+		PFLU_RS05400	0.59	+0.7
1,206,628	+		PFLU_RS05400	0.59	+3.1
1,206,628	+		PFLU_RS05400	0.59	-0.9
1,206,628	+		PFLU_RS05400	0.59	+0.8
1,206,628	+		PFLU_RS05400	0.59	-0.2
1,206,628	+		PFLU_RS05400	0.59	+1.2
1,206,628	+		PFLU_RS05400	0.59	-0.9
1,206,629	-		PFLU_RS05400	0.59	+1.1
1,206,629	-		PFLU_RS05400	0.59	+1.9
1,206,629	-		PFLU_RS05400	0.59	+0.7
1,206,629	-		PFLU_RS05400	0.59	-2.1
1,206,691	+		PFLU_RS05400	0.69	+0.1
1,206,692	-		PFLU_RS05400	0.69	+0.8
1,206,692	-		PFLU_RS05400	0.69	+0.7
1,206,692	-		PFLU_RS05400	0.69	+0.1
1,206,692	-		PFLU_RS05400	0.69	-1.2
1,206,692	-		PFLU_RS05400	0.69	+1.1
1,206,703	+		PFLU_RS05400	0.71	-1.3
1,206,703	+		PFLU_RS05400	0.71	+0.1
1,206,703	+		PFLU_RS05400	0.71	-1.0
1,206,703	+		PFLU_RS05400	0.71	-1.5
1,206,703	+		PFLU_RS05400	0.71	-1.5
1,206,704	-		PFLU_RS05400	0.71	-1.8
1,206,704	-		PFLU_RS05400	0.71	+0.3
1,206,704	-		PFLU_RS05400	0.71	-2.0
1,206,704	-		PFLU_RS05400	0.71	-2.6
1,206,745	+		PFLU_RS05400	0.78	-1.5
1,206,745	+		PFLU_RS05400	0.78	-2.5
1,206,746	-		PFLU_RS05400	0.78	+0.1
1,206,746	-		PFLU_RS05400	0.78	-2.3
1,206,975	-		PFLU_RS05405	0.12	+2.1
1,207,014	+		PFLU_RS05405	0.17	-2.6
1,207,014	+		PFLU_RS05405	0.17	-1.6
1,207,233	+		PFLU_RS05405	0.45	+2.2
1,207,233	+		PFLU_RS05405	0.45	-1.7
1,207,233	+		PFLU_RS05405	0.45	-0.6
1,207,233	+		PFLU_RS05405	0.45	+0.5
1,207,234	-		PFLU_RS05405	0.46	-2.7
1,207,234	-		PFLU_RS05405	0.46	+2.0
1,207,234	-		PFLU_RS05405	0.46	-0.7
1,207,234	-		PFLU_RS05405	0.46	-2.3
1,207,246	+		PFLU_RS05405	0.47	-0.3
1,207,246	+		PFLU_RS05405	0.47	+0.2
1,207,247	-		PFLU_RS05405	0.47	+1.9
1,207,284	+		PFLU_RS05405	0.52	+0.4
1,207,284	+		PFLU_RS05405	0.52	-1.6
1,207,284	+		PFLU_RS05405	0.52	+2.6
1,207,284	+		PFLU_RS05405	0.52	-2.0
1,207,284	+		PFLU_RS05405	0.52	+2.1
1,207,284	+		PFLU_RS05405	0.52	+0.2
1,207,284	+		PFLU_RS05405	0.52	+1.5
1,207,284	+		PFLU_RS05405	0.52	-1.7
1,207,284	+		PFLU_RS05405	0.52	+2.6
1,207,284	+		PFLU_RS05405	0.52	-0.3
1,207,284	+		PFLU_RS05405	0.52	-1.2
1,207,285	-		PFLU_RS05405	0.52	-0.5
1,207,285	-		PFLU_RS05405	0.52	+0.9
1,207,285	-		PFLU_RS05405	0.52	+0.6
1,207,285	-		PFLU_RS05405	0.52	-1.5
1,207,285	-		PFLU_RS05405	0.52	+1.1
1,207,285	-		PFLU_RS05405	0.52	+2.0
1,207,285	-		PFLU_RS05405	0.52	-0.9
1,207,285	-		PFLU_RS05405	0.52	+1.7
1,207,285	-		PFLU_RS05405	0.52	+0.7
1,207,285	-		PFLU_RS05405	0.52	+0.7
1,207,285	-		PFLU_RS05405	0.52	+0.9
1,207,285	-		PFLU_RS05405	0.52	-0.2
1,207,399	-		PFLU_RS05405	0.67	-0.0
1,207,645	+				-1.3
1,207,645	+				-2.3
1,207,645	+				-0.7
1,207,646	-				-1.8
1,207,646	-				+1.3
1,207,646	-				+1.0
1,207,871	-		PFLU_RS05410	0.43	+0.5
1,207,901	+		PFLU_RS05410	0.48	+2.1
1,207,902	-		PFLU_RS05410	0.49	+1.7
1,207,970	+		PFLU_RS05410	0.62	+2.1
1,207,970	+		PFLU_RS05410	0.62	+3.0
1,207,970	+		PFLU_RS05410	0.62	-0.5
1,207,970	+		PFLU_RS05410	0.62	-1.3
1,207,994	+		PFLU_RS05410	0.66	-0.6
1,207,994	+		PFLU_RS05410	0.66	-0.8
1,207,994	+		PFLU_RS05410	0.66	+0.1
1,207,995	-		PFLU_RS05410	0.66	+1.5
1,207,995	-		PFLU_RS05410	0.66	-1.0
1,207,995	-		PFLU_RS05410	0.66	+0.3
1,207,995	-		PFLU_RS05410	0.66	+0.1
1,207,995	-		PFLU_RS05410	0.66	+3.0
1,207,995	-		PFLU_RS05410	0.66	+0.6
1,207,995	-		PFLU_RS05410	0.66	-1.4
1,208,036	+		PFLU_RS05410	0.74	-0.5
1,208,036	+		PFLU_RS05410	0.74	-0.9
1,208,172	+				-0.3
1,208,172	+				+1.5
1,208,172	+				-0.5
1,208,172	+				-0.5
1,208,172	+				-0.9
1,208,172	+				+2.1
1,208,172	+				+1.1
1,208,172	+				+2.1
1,208,172	+				+1.5
1,208,172	+				-0.9
1,208,172	+				-1.0
1,208,172	+				-1.5
1,208,172	+				-0.8
1,208,172	+				+0.4
1,208,173	-				-0.3
1,208,173	-				-1.3
1,208,173	-				-0.5
1,208,173	-				+1.3
1,208,173	-				+0.8
1,208,173	-				-1.5
1,208,173	-				-1.8
1,208,173	-				+1.7
1,208,173	-				+0.5
1,208,173	-				-1.0
1,208,197	-				+2.1
1,208,273	+				+3.1
1,208,274	-				-1.3
1,208,277	+				+1.9
1,208,278	-				-0.6
1,208,278	-				-1.3
1,208,294	+				-2.0
1,208,295	-				+1.3
1,208,317	-				+1.5
1,208,320	+				-1.0
1,208,321	-				+1.1
1,208,321	-				-1.8
1,208,321	-				-1.6
1,208,321	-				-0.0
1,208,327	-				-0.5
1,208,365	-				-2.3
1,208,429	-				-0.2
1,208,477	+				+0.8
1,208,477	+				-1.2
1,208,541	+				-0.2
1,208,542	-				+1.6
1,208,567	+				+0.3
1,208,568	-				-1.0
1,208,597	+				-0.2
1,208,608	-				+2.3
1,208,613	+				-2.3
1,208,614	-				+1.7
1,208,621	+				-1.3
1,208,621	+				-2.1
1,208,621	+				-0.6
1,208,622	-				-0.0
1,208,622	-				+1.3