Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05400

Experiment: Glucose (C) and Ammonium chloride (N); with MOPS; with chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS05390 and PFLU_RS05395 are separated by 147 nucleotidesPFLU_RS05395 and PFLU_RS05400 are separated by 4 nucleotidesPFLU_RS05400 and PFLU_RS05405 are separated by 1 nucleotidesPFLU_RS05405 and PFLU_RS05410 overlap by 4 nucleotides PFLU_RS05390: PFLU_RS05390 - TonB-dependent receptor, at 1,203,855 to 1,205,873 _RS05390 PFLU_RS05395: PFLU_RS05395 - DUF2132 domain-containing protein, at 1,206,021 to 1,206,254 _RS05395 PFLU_RS05400: PFLU_RS05400 - hypothetical protein, at 1,206,259 to 1,206,882 _RS05400 PFLU_RS05405: PFLU_RS05405 - siderophore-interacting protein, at 1,206,884 to 1,207,651 _RS05405 PFLU_RS05410: PFLU_RS05410 - PadR family transcriptional regulator, at 1,207,648 to 1,208,169 _RS05410 Position (kb) 1206 1207Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1205.267 kb on + strand, within PFLU_RS05390at 1205.267 kb on + strand, within PFLU_RS05390at 1205.267 kb on + strand, within PFLU_RS05390at 1205.267 kb on + strand, within PFLU_RS05390at 1205.267 kb on + strand, within PFLU_RS05390at 1205.267 kb on + strand, within PFLU_RS05390at 1205.267 kb on + strand, within PFLU_RS05390at 1205.267 kb on + strand, within PFLU_RS05390at 1205.267 kb on + strand, within PFLU_RS05390at 1205.267 kb on + strand, within PFLU_RS05390at 1205.268 kb on - strand, within PFLU_RS05390at 1205.268 kb on - strand, within PFLU_RS05390at 1205.268 kb on - strand, within PFLU_RS05390at 1205.268 kb on - strand, within PFLU_RS05390at 1205.268 kb on - strand, within PFLU_RS05390at 1205.268 kb on - strand, within PFLU_RS05390at 1205.268 kb on - strand, within PFLU_RS05390at 1205.435 kb on + strand, within PFLU_RS05390at 1205.436 kb on - strand, within PFLU_RS05390at 1205.436 kb on - strand, within PFLU_RS05390at 1205.436 kb on - strand, within PFLU_RS05390at 1205.436 kb on - strand, within PFLU_RS05390at 1205.436 kb on - strand, within PFLU_RS05390at 1205.467 kb on + strand, within PFLU_RS05390at 1205.468 kb on - strand, within PFLU_RS05390at 1205.542 kb on + strand, within PFLU_RS05390at 1205.542 kb on + strand, within PFLU_RS05390at 1205.542 kb on + strand, within PFLU_RS05390at 1205.647 kb on + strand, within PFLU_RS05390at 1205.648 kb on - strand, within PFLU_RS05390at 1205.960 kb on + strandat 1205.960 kb on + strandat 1205.961 kb on - strandat 1205.962 kb on + strandat 1205.981 kb on + strandat 1205.981 kb on + strandat 1205.981 kb on + strandat 1205.982 kb on - strandat 1205.982 kb on - strandat 1205.982 kb on - strandat 1205.982 kb on - strandat 1206.012 kb on - strandat 1206.093 kb on + strand, within PFLU_RS05395at 1206.093 kb on + strand, within PFLU_RS05395at 1206.093 kb on + strand, within PFLU_RS05395at 1206.094 kb on - strand, within PFLU_RS05395at 1206.094 kb on - strand, within PFLU_RS05395at 1206.094 kb on - strand, within PFLU_RS05395at 1206.094 kb on - strand, within PFLU_RS05395at 1206.167 kb on + strand, within PFLU_RS05395at 1206.167 kb on + strand, within PFLU_RS05395at 1206.167 kb on + strand, within PFLU_RS05395at 1206.168 kb on - strand, within PFLU_RS05395at 1206.216 kb on + strand, within PFLU_RS05395at 1206.216 kb on + strand, within PFLU_RS05395at 1206.216 kb on + strand, within PFLU_RS05395at 1206.216 kb on + strand, within PFLU_RS05395at 1206.216 kb on + strand, within PFLU_RS05395at 1206.217 kb on - strand, within PFLU_RS05395at 1206.217 kb on - strand, within PFLU_RS05395at 1206.217 kb on - strand, within PFLU_RS05395at 1206.319 kb on + strandat 1206.319 kb on + strandat 1206.320 kb on - strandat 1206.320 kb on - strandat 1206.320 kb on - strandat 1206.330 kb on - strand, within PFLU_RS05400at 1206.433 kb on + strand, within PFLU_RS05400at 1206.433 kb on + strand, within PFLU_RS05400at 1206.433 kb on + strand, within PFLU_RS05400at 1206.433 kb on + strand, within PFLU_RS05400at 1206.433 kb on + strand, within PFLU_RS05400at 1206.434 kb on - strand, within PFLU_RS05400at 1206.434 kb on - strand, within PFLU_RS05400at 1206.434 kb on - strand, within PFLU_RS05400at 1206.434 kb on - strand, within PFLU_RS05400at 1206.434 kb on - strand, within PFLU_RS05400at 1206.434 kb on - strand, within PFLU_RS05400at 1206.434 kb on - strand, within PFLU_RS05400at 1206.434 kb on - strand, within PFLU_RS05400at 1206.434 kb on - strand, within PFLU_RS05400at 1206.434 kb on - strand, within PFLU_RS05400at 1206.532 kb on + strand, within PFLU_RS05400at 1206.532 kb on + strand, within PFLU_RS05400at 1206.533 kb on - strand, within PFLU_RS05400at 1206.533 kb on - strand, within PFLU_RS05400at 1206.533 kb on - strand, within PFLU_RS05400at 1206.533 kb on - strand, within PFLU_RS05400at 1206.533 kb on - strand, within PFLU_RS05400at 1206.545 kb on + strand, within PFLU_RS05400at 1206.546 kb on - strand, within PFLU_RS05400at 1206.628 kb on + strand, within PFLU_RS05400at 1206.628 kb on + strand, within PFLU_RS05400at 1206.628 kb on + strand, within PFLU_RS05400at 1206.628 kb on + strand, within PFLU_RS05400at 1206.628 kb on + strand, within PFLU_RS05400at 1206.628 kb on + strand, within PFLU_RS05400at 1206.628 kb on + strand, within PFLU_RS05400at 1206.629 kb on - strand, within PFLU_RS05400at 1206.629 kb on - strand, within PFLU_RS05400at 1206.629 kb on - strand, within PFLU_RS05400at 1206.629 kb on - strand, within PFLU_RS05400at 1206.691 kb on + strand, within PFLU_RS05400at 1206.692 kb on - strand, within PFLU_RS05400at 1206.692 kb on - strand, within PFLU_RS05400at 1206.692 kb on - strand, within PFLU_RS05400at 1206.692 kb on - strand, within PFLU_RS05400at 1206.692 kb on - strand, within PFLU_RS05400at 1206.703 kb on + strand, within PFLU_RS05400at 1206.703 kb on + strand, within PFLU_RS05400at 1206.703 kb on + strand, within PFLU_RS05400at 1206.703 kb on + strand, within PFLU_RS05400at 1206.703 kb on + strand, within PFLU_RS05400at 1206.704 kb on - strand, within PFLU_RS05400at 1206.704 kb on - strand, within PFLU_RS05400at 1206.704 kb on - strand, within PFLU_RS05400at 1206.704 kb on - strand, within PFLU_RS05400at 1206.745 kb on + strand, within PFLU_RS05400at 1206.745 kb on + strand, within PFLU_RS05400at 1206.746 kb on - strand, within PFLU_RS05400at 1206.746 kb on - strand, within PFLU_RS05400at 1206.975 kb on - strand, within PFLU_RS05405at 1207.014 kb on + strand, within PFLU_RS05405at 1207.014 kb on + strand, within PFLU_RS05405at 1207.233 kb on + strand, within PFLU_RS05405at 1207.233 kb on + strand, within PFLU_RS05405at 1207.233 kb on + strand, within PFLU_RS05405at 1207.233 kb on + strand, within PFLU_RS05405at 1207.234 kb on - strand, within PFLU_RS05405at 1207.234 kb on - strand, within PFLU_RS05405at 1207.234 kb on - strand, within PFLU_RS05405at 1207.234 kb on - strand, within PFLU_RS05405at 1207.246 kb on + strand, within PFLU_RS05405at 1207.246 kb on + strand, within PFLU_RS05405at 1207.247 kb on - strand, within PFLU_RS05405at 1207.284 kb on + strand, within PFLU_RS05405at 1207.284 kb on + strand, within PFLU_RS05405at 1207.284 kb on + strand, within PFLU_RS05405at 1207.284 kb on + strand, within PFLU_RS05405at 1207.284 kb on + strand, within PFLU_RS05405at 1207.284 kb on + strand, within PFLU_RS05405at 1207.284 kb on + strand, within PFLU_RS05405at 1207.284 kb on + strand, within PFLU_RS05405at 1207.284 kb on + strand, within PFLU_RS05405at 1207.284 kb on + strand, within PFLU_RS05405at 1207.284 kb on + strand, within PFLU_RS05405at 1207.285 kb on - strand, within PFLU_RS05405at 1207.285 kb on - strand, within PFLU_RS05405at 1207.285 kb on - strand, within PFLU_RS05405at 1207.285 kb on - strand, within PFLU_RS05405at 1207.285 kb on - strand, within PFLU_RS05405at 1207.285 kb on - strand, within PFLU_RS05405at 1207.285 kb on - strand, within PFLU_RS05405at 1207.285 kb on - strand, within PFLU_RS05405at 1207.285 kb on - strand, within PFLU_RS05405at 1207.285 kb on - strand, within PFLU_RS05405at 1207.285 kb on - strand, within PFLU_RS05405at 1207.285 kb on - strand, within PFLU_RS05405at 1207.399 kb on - strand, within PFLU_RS05405at 1207.645 kb on + strandat 1207.645 kb on + strandat 1207.645 kb on + strandat 1207.646 kb on - strandat 1207.646 kb on - strandat 1207.646 kb on - strandat 1207.871 kb on - strand, within PFLU_RS05410

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
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1,205,267 + PFLU_RS05390 0.70 +0.4
1,205,267 + PFLU_RS05390 0.70 +1.0
1,205,267 + PFLU_RS05390 0.70 -1.0
1,205,267 + PFLU_RS05390 0.70 -0.4
1,205,267 + PFLU_RS05390 0.70 +1.7
1,205,267 + PFLU_RS05390 0.70 -1.0
1,205,267 + PFLU_RS05390 0.70 +0.4
1,205,267 + PFLU_RS05390 0.70 -0.0
1,205,267 + PFLU_RS05390 0.70 -3.2
1,205,267 + PFLU_RS05390 0.70 -0.9
1,205,268 - PFLU_RS05390 0.70 +2.2
1,205,268 - PFLU_RS05390 0.70 -0.8
1,205,268 - PFLU_RS05390 0.70 -1.2
1,205,268 - PFLU_RS05390 0.70 +1.5
1,205,268 - PFLU_RS05390 0.70 -1.2
1,205,268 - PFLU_RS05390 0.70 +1.7
1,205,268 - PFLU_RS05390 0.70 +0.5
1,205,435 + PFLU_RS05390 0.78 +2.5
1,205,436 - PFLU_RS05390 0.78 +1.3
1,205,436 - PFLU_RS05390 0.78 +0.3
1,205,436 - PFLU_RS05390 0.78 -2.0
1,205,436 - PFLU_RS05390 0.78 +0.7
1,205,436 - PFLU_RS05390 0.78 +0.8
1,205,467 + PFLU_RS05390 0.80 -0.8
1,205,468 - PFLU_RS05390 0.80 +0.7
1,205,542 + PFLU_RS05390 0.84 -1.5
1,205,542 + PFLU_RS05390 0.84 -1.2
1,205,542 + PFLU_RS05390 0.84 -1.8
1,205,647 + PFLU_RS05390 0.89 -0.0
1,205,648 - PFLU_RS05390 0.89 +0.0
1,205,960 + -0.7
1,205,960 + +2.5
1,205,961 - +1.7
1,205,962 + -0.7
1,205,981 + +0.2
1,205,981 + -1.1
1,205,981 + -0.7
1,205,982 - -0.4
1,205,982 - +1.4
1,205,982 - +0.9
1,205,982 - -0.8
1,206,012 - -1.5
1,206,093 + PFLU_RS05395 0.31 +0.9
1,206,093 + PFLU_RS05395 0.31 -0.3
1,206,093 + PFLU_RS05395 0.31 -2.4
1,206,094 - PFLU_RS05395 0.31 -1.5
1,206,094 - PFLU_RS05395 0.31 +2.2
1,206,094 - PFLU_RS05395 0.31 -1.4
1,206,094 - PFLU_RS05395 0.31 +0.0
1,206,167 + PFLU_RS05395 0.62 +1.6
1,206,167 + PFLU_RS05395 0.62 -3.2
1,206,167 + PFLU_RS05395 0.62 -0.7
1,206,168 - PFLU_RS05395 0.63 -0.3
1,206,216 + PFLU_RS05395 0.83 -0.4
1,206,216 + PFLU_RS05395 0.83 -0.7
1,206,216 + PFLU_RS05395 0.83 -0.9
1,206,216 + PFLU_RS05395 0.83 -1.3
1,206,216 + PFLU_RS05395 0.83 -1.9
1,206,217 - PFLU_RS05395 0.84 +3.2
1,206,217 - PFLU_RS05395 0.84 -0.2
1,206,217 - PFLU_RS05395 0.84 -2.6
1,206,319 + -0.2
1,206,319 + +0.0
1,206,320 - +1.0
1,206,320 - +1.4
1,206,320 - +0.6
1,206,330 - PFLU_RS05400 0.11 -2.3
1,206,433 + PFLU_RS05400 0.28 +1.8
1,206,433 + PFLU_RS05400 0.28 -2.5
1,206,433 + PFLU_RS05400 0.28 -2.2
1,206,433 + PFLU_RS05400 0.28 +0.6
1,206,433 + PFLU_RS05400 0.28 +0.0
1,206,434 - PFLU_RS05400 0.28 -1.1
1,206,434 - PFLU_RS05400 0.28 +0.2
1,206,434 - PFLU_RS05400 0.28 +1.5
1,206,434 - PFLU_RS05400 0.28 -0.9
1,206,434 - PFLU_RS05400 0.28 +0.3
1,206,434 - PFLU_RS05400 0.28 +0.1
1,206,434 - PFLU_RS05400 0.28 -1.7
1,206,434 - PFLU_RS05400 0.28 -0.9
1,206,434 - PFLU_RS05400 0.28 -2.2
1,206,434 - PFLU_RS05400 0.28 -1.8
1,206,532 + PFLU_RS05400 0.44 +1.3
1,206,532 + PFLU_RS05400 0.44 -2.2
1,206,533 - PFLU_RS05400 0.44 -1.2
1,206,533 - PFLU_RS05400 0.44 -0.4
1,206,533 - PFLU_RS05400 0.44 -0.7
1,206,533 - PFLU_RS05400 0.44 +0.1
1,206,533 - PFLU_RS05400 0.44 +0.7
1,206,545 + PFLU_RS05400 0.46 -0.9
1,206,546 - PFLU_RS05400 0.46 +1.1
1,206,628 + PFLU_RS05400 0.59 +0.7
1,206,628 + PFLU_RS05400 0.59 +3.1
1,206,628 + PFLU_RS05400 0.59 -0.9
1,206,628 + PFLU_RS05400 0.59 +0.8
1,206,628 + PFLU_RS05400 0.59 -0.2
1,206,628 + PFLU_RS05400 0.59 +1.2
1,206,628 + PFLU_RS05400 0.59 -0.9
1,206,629 - PFLU_RS05400 0.59 +1.1
1,206,629 - PFLU_RS05400 0.59 +1.9
1,206,629 - PFLU_RS05400 0.59 +0.7
1,206,629 - PFLU_RS05400 0.59 -2.1
1,206,691 + PFLU_RS05400 0.69 +0.1
1,206,692 - PFLU_RS05400 0.69 +0.8
1,206,692 - PFLU_RS05400 0.69 +0.7
1,206,692 - PFLU_RS05400 0.69 +0.1
1,206,692 - PFLU_RS05400 0.69 -1.2
1,206,692 - PFLU_RS05400 0.69 +1.1
1,206,703 + PFLU_RS05400 0.71 -1.3
1,206,703 + PFLU_RS05400 0.71 +0.1
1,206,703 + PFLU_RS05400 0.71 -1.0
1,206,703 + PFLU_RS05400 0.71 -1.5
1,206,703 + PFLU_RS05400 0.71 -1.5
1,206,704 - PFLU_RS05400 0.71 -1.8
1,206,704 - PFLU_RS05400 0.71 +0.3
1,206,704 - PFLU_RS05400 0.71 -2.0
1,206,704 - PFLU_RS05400 0.71 -2.6
1,206,745 + PFLU_RS05400 0.78 -1.5
1,206,745 + PFLU_RS05400 0.78 -2.5
1,206,746 - PFLU_RS05400 0.78 +0.1
1,206,746 - PFLU_RS05400 0.78 -2.3
1,206,975 - PFLU_RS05405 0.12 +2.1
1,207,014 + PFLU_RS05405 0.17 -2.6
1,207,014 + PFLU_RS05405 0.17 -1.6
1,207,233 + PFLU_RS05405 0.45 +2.2
1,207,233 + PFLU_RS05405 0.45 -1.7
1,207,233 + PFLU_RS05405 0.45 -0.6
1,207,233 + PFLU_RS05405 0.45 +0.5
1,207,234 - PFLU_RS05405 0.46 -2.7
1,207,234 - PFLU_RS05405 0.46 +2.0
1,207,234 - PFLU_RS05405 0.46 -0.7
1,207,234 - PFLU_RS05405 0.46 -2.3
1,207,246 + PFLU_RS05405 0.47 -0.3
1,207,246 + PFLU_RS05405 0.47 +0.2
1,207,247 - PFLU_RS05405 0.47 +1.9
1,207,284 + PFLU_RS05405 0.52 +0.4
1,207,284 + PFLU_RS05405 0.52 -1.6
1,207,284 + PFLU_RS05405 0.52 +2.6
1,207,284 + PFLU_RS05405 0.52 -2.0
1,207,284 + PFLU_RS05405 0.52 +2.1
1,207,284 + PFLU_RS05405 0.52 +0.2
1,207,284 + PFLU_RS05405 0.52 +1.5
1,207,284 + PFLU_RS05405 0.52 -1.7
1,207,284 + PFLU_RS05405 0.52 +2.6
1,207,284 + PFLU_RS05405 0.52 -0.3
1,207,284 + PFLU_RS05405 0.52 -1.2
1,207,285 - PFLU_RS05405 0.52 -0.5
1,207,285 - PFLU_RS05405 0.52 +0.9
1,207,285 - PFLU_RS05405 0.52 +0.6
1,207,285 - PFLU_RS05405 0.52 -1.5
1,207,285 - PFLU_RS05405 0.52 +1.1
1,207,285 - PFLU_RS05405 0.52 +2.0
1,207,285 - PFLU_RS05405 0.52 -0.9
1,207,285 - PFLU_RS05405 0.52 +1.7
1,207,285 - PFLU_RS05405 0.52 +0.7
1,207,285 - PFLU_RS05405 0.52 +0.7
1,207,285 - PFLU_RS05405 0.52 +0.9
1,207,285 - PFLU_RS05405 0.52 -0.2
1,207,399 - PFLU_RS05405 0.67 -0.0
1,207,645 + -1.3
1,207,645 + -2.3
1,207,645 + -0.7
1,207,646 - -1.8
1,207,646 - +1.3
1,207,646 - +1.0
1,207,871 - PFLU_RS05410 0.43 +0.5

Or see this region's nucleotide sequence