Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26425 and BWI76_RS26430 are separated by 211 nucleotides BWI76_RS26430 and BWI76_RS26435 are separated by 166 nucleotides BWI76_RS26435 and BWI76_RS26440 are separated by 73 nucleotides BWI76_RS26440 and BWI76_RS26445 are separated by 0 nucleotides
BWI76_RS26425: BWI76_RS26425 - zinc/cadmium/mercury/lead-transporting ATPase, at 5,468,832 to 5,471,036
_RS26425
BWI76_RS26430: BWI76_RS26430 - sulfurtransferase TusA, at 5,471,248 to 5,471,493
_RS26430
BWI76_RS26435: BWI76_RS26435 - hypothetical protein, at 5,471,660 to 5,472,325
_RS26435
BWI76_RS26440: BWI76_RS26440 - hypothetical protein, at 5,472,399 to 5,472,956
_RS26440
BWI76_RS26445: BWI76_RS26445 - MFS transporter, at 5,472,957 to 5,474,177
_RS26445
Position (kb) 5471
5472
5473 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5470.799 kb on - strand, within BWI76_RS26425 at 5470.834 kb on - strand at 5470.835 kb on - strand at 5470.992 kb on + strand at 5470.992 kb on + strand at 5471.171 kb on + strand at 5471.530 kb on - strand at 5471.561 kb on - strand at 5471.620 kb on - strand at 5471.706 kb on - strand at 5471.889 kb on + strand, within BWI76_RS26435 at 5471.889 kb on + strand, within BWI76_RS26435 at 5471.907 kb on - strand, within BWI76_RS26435 at 5471.926 kb on + strand, within BWI76_RS26435 at 5472.117 kb on + strand, within BWI76_RS26435 at 5472.200 kb on + strand, within BWI76_RS26435 at 5472.320 kb on + strand at 5472.320 kb on + strand at 5472.320 kb on + strand at 5472.328 kb on - strand at 5472.617 kb on + strand, within BWI76_RS26440 at 5472.957 kb on + strand at 5472.957 kb on + strand at 5473.226 kb on + strand, within BWI76_RS26445
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 5,470,799 - BWI76_RS26425 0.89 +0.3 5,470,834 - -4.4 5,470,835 - +1.0 5,470,992 + -5.2 5,470,992 + -4.2 5,471,171 + +0.8 5,471,530 - +0.5 5,471,561 - +0.3 5,471,620 - +0.1 5,471,706 - -3.0 5,471,889 + BWI76_RS26435 0.34 +0.9 5,471,889 + BWI76_RS26435 0.34 +0.7 5,471,907 - BWI76_RS26435 0.37 +2.0 5,471,926 + BWI76_RS26435 0.40 +1.2 5,472,117 + BWI76_RS26435 0.69 +0.9 5,472,200 + BWI76_RS26435 0.81 +0.7 5,472,320 + +1.6 5,472,320 + +0.3 5,472,320 + -1.0 5,472,328 - +1.4 5,472,617 + BWI76_RS26440 0.39 +0.9 5,472,957 + +1.5 5,472,957 + +0.5 5,473,226 + BWI76_RS26445 0.22 -0.6
Or see this region's nucleotide sequence