Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23670 and BWI76_RS23675 are separated by 109 nucleotides BWI76_RS23675 and BWI76_RS23680 are separated by 11 nucleotides BWI76_RS23680 and BWI76_RS23685 are separated by 36 nucleotides
BWI76_RS23670: BWI76_RS23670 - alkaline phosphatase, at 4,940,581 to 4,941,381
_RS23670
BWI76_RS23675: BWI76_RS23675 - allulose-6-phosphate 3-epimerase, at 4,941,491 to 4,942,180
_RS23675
BWI76_RS23680: BWI76_RS23680 - ribokinase, at 4,942,192 to 4,943,133
_RS23680
BWI76_RS23685: BWI76_RS23685 - MFS transporter, at 4,943,170 to 4,944,504
_RS23685
Position (kb) 4942
4943
4944 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4941.207 kb on - strand, within BWI76_RS23670 at 4941.266 kb on + strand, within BWI76_RS23670 at 4941.297 kb on + strand, within BWI76_RS23670 at 4941.343 kb on + strand at 4941.644 kb on - strand, within BWI76_RS23675 at 4941.832 kb on + strand, within BWI76_RS23675 at 4941.851 kb on + strand, within BWI76_RS23675 at 4941.860 kb on + strand, within BWI76_RS23675 at 4941.870 kb on + strand, within BWI76_RS23675 at 4941.878 kb on - strand, within BWI76_RS23675 at 4941.973 kb on + strand, within BWI76_RS23675 at 4942.073 kb on - strand, within BWI76_RS23675 at 4942.074 kb on - strand, within BWI76_RS23675 at 4942.123 kb on - strand at 4942.162 kb on - strand at 4942.239 kb on + strand at 4942.428 kb on - strand, within BWI76_RS23680 at 4942.663 kb on + strand, within BWI76_RS23680 at 4942.717 kb on + strand, within BWI76_RS23680 at 4942.927 kb on - strand, within BWI76_RS23680 at 4942.927 kb on - strand, within BWI76_RS23680 at 4942.996 kb on + strand, within BWI76_RS23680 at 4943.142 kb on - strand at 4943.159 kb on - strand at 4943.252 kb on + strand at 4943.473 kb on + strand, within BWI76_RS23685 at 4943.476 kb on - strand, within BWI76_RS23685 at 4943.476 kb on - strand, within BWI76_RS23685 at 4943.523 kb on + strand, within BWI76_RS23685 at 4943.531 kb on - strand, within BWI76_RS23685 at 4943.531 kb on - strand, within BWI76_RS23685 at 4943.532 kb on - strand, within BWI76_RS23685 at 4943.552 kb on + strand, within BWI76_RS23685 at 4943.619 kb on - strand, within BWI76_RS23685 at 4943.806 kb on + strand, within BWI76_RS23685 at 4944.125 kb on - strand, within BWI76_RS23685
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 4,941,207 - BWI76_RS23670 0.78 -0.6 4,941,266 + BWI76_RS23670 0.86 -0.6 4,941,297 + BWI76_RS23670 0.89 -0.4 4,941,343 + -2.3 4,941,644 - BWI76_RS23675 0.22 +0.2 4,941,832 + BWI76_RS23675 0.49 -2.8 4,941,851 + BWI76_RS23675 0.52 +0.9 4,941,860 + BWI76_RS23675 0.53 +0.9 4,941,870 + BWI76_RS23675 0.55 -1.4 4,941,878 - BWI76_RS23675 0.56 +0.1 4,941,973 + BWI76_RS23675 0.70 +1.2 4,942,073 - BWI76_RS23675 0.84 -2.6 4,942,074 - BWI76_RS23675 0.84 +0.0 4,942,123 - -2.4 4,942,162 - +1.5 4,942,239 + -0.1 4,942,428 - BWI76_RS23680 0.25 -3.5 4,942,663 + BWI76_RS23680 0.50 -0.7 4,942,717 + BWI76_RS23680 0.56 -0.8 4,942,927 - BWI76_RS23680 0.78 -0.1 4,942,927 - BWI76_RS23680 0.78 -0.5 4,942,996 + BWI76_RS23680 0.85 -2.6 4,943,142 - -3.3 4,943,159 - +0.0 4,943,252 + +0.0 4,943,473 + BWI76_RS23685 0.23 +1.9 4,943,476 - BWI76_RS23685 0.23 -3.9 4,943,476 - BWI76_RS23685 0.23 +0.7 4,943,523 + BWI76_RS23685 0.26 +0.2 4,943,531 - BWI76_RS23685 0.27 +0.4 4,943,531 - BWI76_RS23685 0.27 +0.2 4,943,532 - BWI76_RS23685 0.27 +0.3 4,943,552 + BWI76_RS23685 0.29 +1.8 4,943,619 - BWI76_RS23685 0.34 -0.3 4,943,806 + BWI76_RS23685 0.48 -0.5 4,944,125 - BWI76_RS23685 0.72 -1.4
Or see this region's nucleotide sequence