Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23575 and BWI76_RS23580 are separated by 12 nucleotides BWI76_RS23580 and BWI76_RS23585 are separated by 14 nucleotides BWI76_RS23585 and BWI76_RS23590 are separated by 28 nucleotides
BWI76_RS23575: BWI76_RS23575 - hypothetical protein, at 4,917,635 to 4,918,165
_RS23575
BWI76_RS23580: BWI76_RS23580 - hypothetical protein, at 4,918,178 to 4,918,678
_RS23580
BWI76_RS23585: BWI76_RS23585 - minor component of type 1 fimbriae, at 4,918,693 to 4,919,655
_RS23585
BWI76_RS23590: BWI76_RS23590 - EAL domain-containing protein, at 4,919,684 to 4,921,120
_RS23590
Position (kb) 4918
4919
4920 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4918.012 kb on + strand, within BWI76_RS23575 at 4918.053 kb on + strand, within BWI76_RS23575 at 4918.063 kb on + strand at 4918.088 kb on + strand, within BWI76_RS23575 at 4918.196 kb on - strand at 4918.204 kb on - strand at 4918.346 kb on - strand, within BWI76_RS23580 at 4918.346 kb on - strand, within BWI76_RS23580 at 4918.463 kb on - strand, within BWI76_RS23580 at 4918.492 kb on + strand, within BWI76_RS23580 at 4918.661 kb on + strand at 4918.737 kb on + strand at 4918.737 kb on + strand at 4918.737 kb on + strand at 4918.737 kb on + strand at 4918.737 kb on + strand at 4918.740 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.785 kb on + strand at 4918.869 kb on + strand, within BWI76_RS23585 at 4918.891 kb on + strand, within BWI76_RS23585 at 4918.987 kb on + strand, within BWI76_RS23585 at 4919.144 kb on + strand, within BWI76_RS23585 at 4919.162 kb on - strand, within BWI76_RS23585 at 4919.165 kb on - strand, within BWI76_RS23585 at 4919.329 kb on - strand, within BWI76_RS23585 at 4919.373 kb on - strand, within BWI76_RS23585 at 4919.404 kb on - strand, within BWI76_RS23585 at 4919.488 kb on - strand, within BWI76_RS23585 at 4919.501 kb on + strand, within BWI76_RS23585 at 4919.658 kb on + strand at 4919.714 kb on - strand at 4919.867 kb on - strand, within BWI76_RS23590 at 4919.937 kb on + strand, within BWI76_RS23590 at 4920.014 kb on - strand, within BWI76_RS23590 at 4920.035 kb on - strand, within BWI76_RS23590 at 4920.103 kb on - strand, within BWI76_RS23590 at 4920.270 kb on - strand, within BWI76_RS23590 at 4920.518 kb on + strand, within BWI76_RS23590 at 4920.559 kb on - strand, within BWI76_RS23590
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 4,918,012 + BWI76_RS23575 0.71 +0.4 4,918,053 + BWI76_RS23575 0.79 -0.0 4,918,063 + -1.1 4,918,088 + BWI76_RS23575 0.85 +0.7 4,918,196 - +3.3 4,918,204 - -3.6 4,918,346 - BWI76_RS23580 0.34 -3.1 4,918,346 - BWI76_RS23580 0.34 -2.9 4,918,463 - BWI76_RS23580 0.57 +1.0 4,918,492 + BWI76_RS23580 0.63 -1.9 4,918,661 + +2.4 4,918,737 + +0.0 4,918,737 + -3.1 4,918,737 + +1.7 4,918,737 + -1.9 4,918,737 + -2.5 4,918,740 - +0.2 4,918,745 - -3.5 4,918,745 - +0.3 4,918,745 - -0.1 4,918,745 - +1.8 4,918,745 - +1.5 4,918,745 - +0.0 4,918,745 - +1.6 4,918,785 + +0.4 4,918,869 + BWI76_RS23585 0.18 +1.7 4,918,891 + BWI76_RS23585 0.21 -0.3 4,918,987 + BWI76_RS23585 0.31 -4.0 4,919,144 + BWI76_RS23585 0.47 -2.1 4,919,162 - BWI76_RS23585 0.49 -0.5 4,919,165 - BWI76_RS23585 0.49 -2.6 4,919,329 - BWI76_RS23585 0.66 -0.9 4,919,373 - BWI76_RS23585 0.71 -0.4 4,919,404 - BWI76_RS23585 0.74 -3.4 4,919,488 - BWI76_RS23585 0.83 -0.0 4,919,501 + BWI76_RS23585 0.84 +0.5 4,919,658 + +0.2 4,919,714 - +1.9 4,919,867 - BWI76_RS23590 0.13 +0.3 4,919,937 + BWI76_RS23590 0.18 -1.6 4,920,014 - BWI76_RS23590 0.23 +0.4 4,920,035 - BWI76_RS23590 0.24 +0.7 4,920,103 - BWI76_RS23590 0.29 +0.5 4,920,270 - BWI76_RS23590 0.41 +1.0 4,920,518 + BWI76_RS23590 0.58 -1.1 4,920,559 - BWI76_RS23590 0.61 -0.9
Or see this region's nucleotide sequence