Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22360 and BWI76_RS22365 overlap by 4 nucleotides BWI76_RS22365 and BWI76_RS22370 are separated by 258 nucleotides
BWI76_RS22360: BWI76_RS22360 - hydrogenase formation protein HypD, at 4,659,466 to 4,660,587
_RS22360
BWI76_RS22365: BWI76_RS22365 - hydrogenase expression/formation protein HypE, at 4,660,584 to 4,661,594
_RS22365
BWI76_RS22370: BWI76_RS22370 - transcriptional regulator FhlA, at 4,661,853 to 4,663,925
_RS22370
Position (kb)
4660
4661
4662 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4659.936 kb on - strand, within BWI76_RS22360 at 4660.068 kb on + strand, within BWI76_RS22360 at 4660.101 kb on - strand, within BWI76_RS22360 at 4660.135 kb on - strand, within BWI76_RS22360 at 4660.196 kb on - strand, within BWI76_RS22360 at 4660.407 kb on + strand, within BWI76_RS22360 at 4660.615 kb on - strand at 4660.678 kb on - strand at 4661.187 kb on + strand, within BWI76_RS22365 at 4661.235 kb on + strand, within BWI76_RS22365 at 4661.416 kb on - strand, within BWI76_RS22365 at 4661.524 kb on + strand at 4661.639 kb on + strand at 4661.653 kb on - strand at 4662.124 kb on - strand, within BWI76_RS22370 at 4662.147 kb on - strand, within BWI76_RS22370 at 4662.375 kb on - strand, within BWI76_RS22370 at 4662.433 kb on + strand, within BWI76_RS22370 at 4662.439 kb on - strand, within BWI76_RS22370 at 4662.523 kb on + strand, within BWI76_RS22370 at 4662.531 kb on - strand, within BWI76_RS22370 at 4662.531 kb on - strand, within BWI76_RS22370 at 4662.560 kb on + strand, within BWI76_RS22370
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 4,659,936 - BWI76_RS22360 0.42 -0.0 4,660,068 + BWI76_RS22360 0.54 -0.9 4,660,101 - BWI76_RS22360 0.57 +0.0 4,660,135 - BWI76_RS22360 0.60 +1.0 4,660,196 - BWI76_RS22360 0.65 +0.9 4,660,407 + BWI76_RS22360 0.84 +0.9 4,660,615 - +0.0 4,660,678 - +0.2 4,661,187 + BWI76_RS22365 0.60 +0.7 4,661,235 + BWI76_RS22365 0.64 +0.8 4,661,416 - BWI76_RS22365 0.82 +1.1 4,661,524 + -0.4 4,661,639 + +0.1 4,661,653 - -3.1 4,662,124 - BWI76_RS22370 0.13 +0.2 4,662,147 - BWI76_RS22370 0.14 +0.2 4,662,375 - BWI76_RS22370 0.25 +0.1 4,662,433 + BWI76_RS22370 0.28 -0.6 4,662,439 - BWI76_RS22370 0.28 +0.3 4,662,523 + BWI76_RS22370 0.32 -0.9 4,662,531 - BWI76_RS22370 0.33 +1.5 4,662,531 - BWI76_RS22370 0.33 -2.6 4,662,560 + BWI76_RS22370 0.34 -0.6
Or see this region's nucleotide sequence