Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21880 and BWI76_RS21885 are separated by 10 nucleotides BWI76_RS21885 and BWI76_RS21890 are separated by 12 nucleotides BWI76_RS21890 and BWI76_RS21895 are separated by 9 nucleotides BWI76_RS21895 and BWI76_RS21900 are separated by 24 nucleotides
BWI76_RS21880: BWI76_RS21880 - agmatinase, at 4,572,269 to 4,573,219
_RS21880
BWI76_RS21885: BWI76_RS21885 - AP endonuclease, family 2, at 4,573,230 to 4,574,078
_RS21885
BWI76_RS21890: BWI76_RS21890 - oxidoreductase, at 4,574,091 to 4,575,167
_RS21890
BWI76_RS21895: BWI76_RS21895 - amino acid ABC transport system periplasmic amino acid-binding component, at 4,575,177 to 4,575,980
_RS21895
BWI76_RS21900: BWI76_RS21900 - amino acid ABC transporter permease/ATP-binding protein, at 4,576,005 to 4,577,525
_RS21900
Position (kb) 4574
4575
4576 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4573.261 kb on - strand at 4573.264 kb on + strand at 4573.431 kb on - strand, within BWI76_RS21885 at 4573.513 kb on + strand, within BWI76_RS21885 at 4573.615 kb on + strand, within BWI76_RS21885 at 4573.791 kb on + strand, within BWI76_RS21885 at 4573.799 kb on - strand, within BWI76_RS21885 at 4573.799 kb on - strand, within BWI76_RS21885 at 4573.890 kb on - strand, within BWI76_RS21885 at 4574.040 kb on - strand at 4574.323 kb on + strand, within BWI76_RS21890 at 4574.441 kb on + strand, within BWI76_RS21890 at 4574.449 kb on - strand, within BWI76_RS21890 at 4574.524 kb on + strand, within BWI76_RS21890 at 4574.655 kb on + strand, within BWI76_RS21890 at 4574.716 kb on - strand, within BWI76_RS21890 at 4575.036 kb on + strand, within BWI76_RS21890 at 4575.044 kb on - strand, within BWI76_RS21890 at 4575.068 kb on + strand at 4575.221 kb on - strand at 4575.221 kb on - strand at 4575.272 kb on + strand, within BWI76_RS21895 at 4575.357 kb on + strand, within BWI76_RS21895 at 4575.520 kb on + strand, within BWI76_RS21895 at 4575.520 kb on + strand, within BWI76_RS21895 at 4575.526 kb on - strand, within BWI76_RS21895 at 4575.527 kb on - strand, within BWI76_RS21895 at 4575.573 kb on - strand, within BWI76_RS21895 at 4575.606 kb on - strand, within BWI76_RS21895 at 4575.657 kb on + strand, within BWI76_RS21895 at 4575.818 kb on - strand, within BWI76_RS21895 at 4575.885 kb on - strand, within BWI76_RS21895 at 4575.924 kb on - strand at 4575.925 kb on - strand at 4576.142 kb on + strand at 4576.143 kb on - strand at 4576.144 kb on + strand at 4576.159 kb on + strand, within BWI76_RS21900
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 4,573,261 - +0.1 4,573,264 + +0.8 4,573,431 - BWI76_RS21885 0.24 +0.4 4,573,513 + BWI76_RS21885 0.33 +2.0 4,573,615 + BWI76_RS21885 0.45 -4.1 4,573,791 + BWI76_RS21885 0.66 -2.9 4,573,799 - BWI76_RS21885 0.67 -0.0 4,573,799 - BWI76_RS21885 0.67 +1.0 4,573,890 - BWI76_RS21885 0.78 -0.0 4,574,040 - +0.4 4,574,323 + BWI76_RS21890 0.22 +1.2 4,574,441 + BWI76_RS21890 0.32 -1.0 4,574,449 - BWI76_RS21890 0.33 +0.2 4,574,524 + BWI76_RS21890 0.40 +0.6 4,574,655 + BWI76_RS21890 0.52 -1.4 4,574,716 - BWI76_RS21890 0.58 +0.2 4,575,036 + BWI76_RS21890 0.88 +0.0 4,575,044 - BWI76_RS21890 0.88 -0.8 4,575,068 + +0.3 4,575,221 - +0.6 4,575,221 - +1.1 4,575,272 + BWI76_RS21895 0.12 +1.0 4,575,357 + BWI76_RS21895 0.22 -1.0 4,575,520 + BWI76_RS21895 0.43 +1.0 4,575,520 + BWI76_RS21895 0.43 -0.5 4,575,526 - BWI76_RS21895 0.43 +1.0 4,575,527 - BWI76_RS21895 0.44 -0.5 4,575,573 - BWI76_RS21895 0.49 -2.0 4,575,606 - BWI76_RS21895 0.53 -2.2 4,575,657 + BWI76_RS21895 0.60 -0.3 4,575,818 - BWI76_RS21895 0.80 -0.3 4,575,885 - BWI76_RS21895 0.88 +0.2 4,575,924 - -2.3 4,575,925 - +0.7 4,576,142 + +0.2 4,576,143 - -1.0 4,576,144 + +0.3 4,576,159 + BWI76_RS21900 0.10 +1.2
Or see this region's nucleotide sequence