Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21875

Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
4,570,257	-		BWI76_RS21865	0.82	-1.9
4,570,264	-		BWI76_RS21865	0.83	-2.2
4,570,305	+		BWI76_RS21865	0.85	+0.6
4,570,383	-				-2.9
4,570,387	+				-2.2
4,570,389	-				-3.6
4,570,389	-				+2.4
4,570,436	+				-0.6
4,570,439	+				-1.0
4,570,441	-				+1.1
4,570,445	+				-1.6
4,570,451	-				+1.0
4,570,459	-				+1.9
4,570,462	-				-1.8
4,570,472	-				-1.6
4,570,540	+				-1.4
4,570,550	+				-4.0
4,570,664	+		BWI76_RS21870	0.31	+0.0
4,570,664	+		BWI76_RS21870	0.31	-2.0
4,570,664	+		BWI76_RS21870	0.31	-2.3
4,570,664	+		BWI76_RS21870	0.31	-1.0
4,570,664	+		BWI76_RS21870	0.31	-3.4
4,570,664	+		BWI76_RS21870	0.31	-4.1
4,570,672	-		BWI76_RS21870	0.33	+1.0
4,570,682	-		BWI76_RS21870	0.35	-0.5
4,570,694	-		BWI76_RS21870	0.38	-2.2
4,570,699	+		BWI76_RS21870	0.40	-2.0
4,570,707	-		BWI76_RS21870	0.41	+1.0
4,570,707	-		BWI76_RS21870	0.41	+0.0
4,570,731	-		BWI76_RS21870	0.47	-0.6
4,570,793	-		BWI76_RS21870	0.63	-3.0
4,570,807	+		BWI76_RS21870	0.66	-1.8
4,570,807	+		BWI76_RS21870	0.66	+0.4
4,570,812	+		BWI76_RS21870	0.67	+1.7
4,570,820	-		BWI76_RS21870	0.69	-1.3
4,571,023	+				-2.0
4,571,091	+				+1.1
4,571,091	+				-2.7
4,571,091	+				+1.0
4,571,164	+				-1.8
4,571,236	+				-2.1
4,571,236	+				-0.8
4,571,244	-				+1.6
4,571,248	+				+3.3
4,571,248	+				-4.4
4,571,248	+				+0.2
4,571,248	+				-2.3
4,571,248	+				-0.4
4,571,252	+				-1.2
4,571,257	+				+0.2
4,571,257	+				-2.2
4,571,257	+				+1.0
4,571,265	-				-2.9
4,571,265	-				-3.2
4,571,265	-				-1.3
4,571,274	-				+0.4
4,571,274	-				-2.2
4,571,275	-				+0.5
4,571,277	-				+0.2
4,571,293	+				-0.6
4,571,294	+				-0.3
4,571,303	+				+0.0
4,571,309	+				-2.0
4,571,310	-				-1.6
4,571,311	-				+1.2
4,571,311	-				+0.2
4,571,317	-				-1.3
4,571,334	-		BWI76_RS21875	0.10	-0.2
4,571,396	+		BWI76_RS21875	0.17	+2.4
4,571,401	+		BWI76_RS21875	0.18	-3.6
4,571,407	+		BWI76_RS21875	0.18	-0.3
4,571,453	+		BWI76_RS21875	0.23	-3.3
4,571,460	-		BWI76_RS21875	0.24	+0.9
4,571,491	+		BWI76_RS21875	0.27	+0.3
4,571,562	-		BWI76_RS21875	0.35	-1.9
4,571,619	+		BWI76_RS21875	0.41	-0.7
4,571,626	+		BWI76_RS21875	0.42	-0.2
4,571,626	+		BWI76_RS21875	0.42	+1.7
4,571,634	-		BWI76_RS21875	0.43	-0.5
4,571,875	+		BWI76_RS21875	0.70	+0.3
4,571,974	-		BWI76_RS21875	0.80	-1.0
4,571,974	-		BWI76_RS21875	0.80	-0.4
4,572,084	+				-2.5
4,572,552	+		BWI76_RS21880	0.30	+0.1
4,572,562	+				-2.0
4,572,703	+		BWI76_RS21880	0.46	-1.6
4,572,841	+		BWI76_RS21880	0.60	+0.0
4,572,841	+		BWI76_RS21880	0.60	-2.3
4,572,849	-		BWI76_RS21880	0.61	+0.4
4,572,849	-		BWI76_RS21880	0.61	+2.9
4,572,892	+		BWI76_RS21880	0.66	+0.2
4,572,900	-		BWI76_RS21880	0.66	+1.2
4,572,900	-				-1.1
4,572,955	+		BWI76_RS21880	0.72	-0.6
4,573,006	+		BWI76_RS21880	0.77	-2.7