Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20885 and BWI76_RS20890 are separated by 12 nucleotides BWI76_RS20890 and BWI76_RS20895 are separated by 120 nucleotides BWI76_RS20895 and BWI76_RS20900 are separated by 108 nucleotides
BWI76_RS20885: BWI76_RS20885 - tRNA(Met) cytidine acetyltransferase TmcA, at 4,366,592 to 4,368,592
_RS20885
BWI76_RS20890: BWI76_RS20890 - neutral zinc metallopeptidase, at 4,368,605 to 4,369,474
_RS20890
BWI76_RS20895: BWI76_RS20895 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 4,369,595 to 4,370,308
_RS20895
BWI76_RS20900: BWI76_RS20900 - outer membrane protein assembly factor BamC, at 4,370,417 to 4,371,451
_RS20900
Position (kb) 4368
4369
4370 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4367.901 kb on + strand, within BWI76_RS20885 at 4367.909 kb on - strand, within BWI76_RS20885 at 4368.287 kb on + strand, within BWI76_RS20885 at 4368.300 kb on - strand, within BWI76_RS20885 at 4368.430 kb on + strand at 4368.438 kb on - strand at 4368.450 kb on - strand at 4368.470 kb on + strand at 4368.487 kb on - strand at 4368.632 kb on - strand at 4368.632 kb on - strand at 4368.806 kb on + strand, within BWI76_RS20890 at 4368.836 kb on - strand, within BWI76_RS20890 at 4368.978 kb on + strand, within BWI76_RS20890 at 4368.986 kb on - strand, within BWI76_RS20890 at 4368.986 kb on - strand, within BWI76_RS20890 at 4369.069 kb on - strand, within BWI76_RS20890 at 4369.071 kb on - strand, within BWI76_RS20890 at 4369.646 kb on - strand at 4369.705 kb on - strand, within BWI76_RS20895 at 4369.745 kb on - strand, within BWI76_RS20895 at 4369.755 kb on + strand, within BWI76_RS20895 at 4369.755 kb on + strand, within BWI76_RS20895 at 4369.755 kb on + strand, within BWI76_RS20895 at 4370.032 kb on - strand, within BWI76_RS20895 at 4370.095 kb on + strand, within BWI76_RS20895 at 4370.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 4,367,901 + BWI76_RS20885 0.65 -2.7 4,367,909 - BWI76_RS20885 0.66 +0.6 4,368,287 + BWI76_RS20885 0.85 -4.1 4,368,300 - BWI76_RS20885 0.85 +0.3 4,368,430 + -1.1 4,368,438 - -2.4 4,368,450 - -1.5 4,368,470 + +0.0 4,368,487 - +1.2 4,368,632 - -1.1 4,368,632 - -0.8 4,368,806 + BWI76_RS20890 0.23 -0.4 4,368,836 - BWI76_RS20890 0.27 +2.9 4,368,978 + BWI76_RS20890 0.43 +0.3 4,368,986 - BWI76_RS20890 0.44 +0.7 4,368,986 - BWI76_RS20890 0.44 +0.6 4,369,069 - BWI76_RS20890 0.53 +0.0 4,369,071 - BWI76_RS20890 0.54 +1.0 4,369,646 - -1.3 4,369,705 - BWI76_RS20895 0.15 -2.7 4,369,745 - BWI76_RS20895 0.21 -0.5 4,369,755 + BWI76_RS20895 0.22 -2.3 4,369,755 + BWI76_RS20895 0.22 -2.4 4,369,755 + BWI76_RS20895 0.22 -2.3 4,370,032 - BWI76_RS20895 0.61 -2.1 4,370,095 + BWI76_RS20895 0.70 -3.3 4,370,460 + -1.6
Or see this region's nucleotide sequence