Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16280 and BWI76_RS16285 are separated by 98 nucleotides BWI76_RS16285 and BWI76_RS16290 are separated by 25 nucleotides
BWI76_RS16280: BWI76_RS16280 - mannose-6-phosphate isomerase, at 3,378,527 to 3,379,705
_RS16280
BWI76_RS16285: BWI76_RS16285 - hypothetical protein, at 3,379,804 to 3,381,309
_RS16285
BWI76_RS16290: BWI76_RS16290 - Mal regulon transcriptional regulator MalI, at 3,381,335 to 3,382,363
_RS16290
Position (kb)
3379
3380
3381
3382 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3378.812 kb on + strand, within BWI76_RS16280 at 3378.916 kb on + strand, within BWI76_RS16280 at 3379.465 kb on - strand, within BWI76_RS16280 at 3379.537 kb on + strand, within BWI76_RS16280 at 3379.933 kb on + strand at 3380.154 kb on + strand, within BWI76_RS16285 at 3380.167 kb on - strand, within BWI76_RS16285 at 3380.562 kb on + strand, within BWI76_RS16285 at 3380.622 kb on - strand, within BWI76_RS16285 at 3380.837 kb on - strand, within BWI76_RS16285 at 3380.850 kb on + strand, within BWI76_RS16285 at 3381.054 kb on - strand, within BWI76_RS16285 at 3381.077 kb on - strand, within BWI76_RS16285 at 3381.426 kb on - strand at 3381.444 kb on - strand, within BWI76_RS16290 at 3381.494 kb on - strand, within BWI76_RS16290 at 3381.580 kb on + strand, within BWI76_RS16290 at 3382.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 3,378,812 + BWI76_RS16280 0.24 +0.3 3,378,916 + BWI76_RS16280 0.33 +0.3 3,379,465 - BWI76_RS16280 0.80 +1.2 3,379,537 + BWI76_RS16280 0.86 -3.4 3,379,933 + +1.0 3,380,154 + BWI76_RS16285 0.23 +0.9 3,380,167 - BWI76_RS16285 0.24 +1.6 3,380,562 + BWI76_RS16285 0.50 +0.6 3,380,622 - BWI76_RS16285 0.54 -1.9 3,380,837 - BWI76_RS16285 0.69 +0.7 3,380,850 + BWI76_RS16285 0.69 -1.1 3,381,054 - BWI76_RS16285 0.83 -2.5 3,381,077 - BWI76_RS16285 0.85 +2.0 3,381,426 - +1.0 3,381,444 - BWI76_RS16290 0.11 +0.5 3,381,494 - BWI76_RS16290 0.15 +0.1 3,381,580 + BWI76_RS16290 0.24 -1.9 3,382,293 - +0.1
Or see this region's nucleotide sequence