Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15425

Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
3,232,665	+		BWI76_RS15420	0.72	-1.5
3,233,193	+		BWI76_RS15420	0.89	-0.5
3,233,246	-				-0.4
3,233,356	+				-2.0
3,233,364	-				-0.9
3,233,367	-				-0.0
3,233,374	+				+0.1
3,233,381	-				+0.5
3,233,446	-				-0.3
3,233,446	-				-1.9
3,233,467	+				-2.1
3,233,467	+				+0.7
3,233,467	+				+0.7
3,233,467	+				+2.6
3,233,467	+				+0.9
3,233,467	+				-1.2
3,233,467	+				+0.5
3,233,467	+				+1.0
3,233,469	+				+2.4
3,233,469	+				-0.4
3,233,469	+				+0.2
3,233,475	-				-2.3
3,233,485	-				+0.5
3,233,486	+				+1.0
3,233,503	+				-0.2
3,233,511	-				-0.5
3,233,511	-				-0.2
3,233,534	+				+0.5
3,233,565	+				-1.8
3,233,573	-				-0.2
3,233,579	+				+0.6
3,233,610	-				-0.3
3,233,611	+				-2.5
3,233,612	+				+0.4
3,233,612	+				-2.0
3,233,612	+				+1.0
3,233,620	-				+1.7
3,233,620	-				-2.3
3,233,620	-				+0.8
3,233,620	-				-1.9
3,233,762	-		BWI76_RS15425	0.13	+2.2
3,233,824	+		BWI76_RS15425	0.18	-0.6
3,233,832	-		BWI76_RS15425	0.18	-3.7
3,233,842	-		BWI76_RS15425	0.19	-1.3
3,233,950	+		BWI76_RS15425	0.28	+2.3
3,233,950	+		BWI76_RS15425	0.28	-3.3
3,233,950	+				+1.0
3,233,950	+		BWI76_RS15425	0.28	-0.5
3,233,950	+		BWI76_RS15425	0.28	+0.7
3,233,950	+		BWI76_RS15425	0.28	+1.3
3,233,950	+		BWI76_RS15425	0.28	-1.3
3,233,950	+		BWI76_RS15425	0.28	-1.5
3,233,950	+		BWI76_RS15425	0.28	-0.2
3,233,950	+		BWI76_RS15425	0.28	-0.2
3,233,950	+		BWI76_RS15425	0.28	-2.3
3,233,950	+		BWI76_RS15425	0.28	-2.0
3,233,950	+		BWI76_RS15425	0.28	+1.2
3,233,950	+		BWI76_RS15425	0.28	-2.0
3,233,950	+		BWI76_RS15425	0.28	+1.0
3,233,950	+		BWI76_RS15425	0.28	-2.4
3,233,950	+		BWI76_RS15425	0.28	-1.0
3,233,950	+		BWI76_RS15425	0.28	-3.1
3,233,950	+		BWI76_RS15425	0.28	-1.5
3,233,950	+		BWI76_RS15425	0.28	-1.0
3,233,950	+				+1.0
3,233,958	-				-0.5
3,233,958	-		BWI76_RS15425	0.28	-0.5
3,233,958	-		BWI76_RS15425	0.28	-2.1
3,233,958	-		BWI76_RS15425	0.28	+1.6
3,233,958	-				+0.0
3,233,958	-		BWI76_RS15425	0.28	-0.5
3,233,958	-		BWI76_RS15425	0.28	-0.4
3,233,958	-		BWI76_RS15425	0.28	-2.5
3,233,958	-		BWI76_RS15425	0.28	-1.3
3,233,958	-		BWI76_RS15425	0.28	+0.0
3,233,958	-		BWI76_RS15425	0.28	-1.3
3,233,958	-		BWI76_RS15425	0.28	+0.0
3,233,958	-		BWI76_RS15425	0.28	+1.0
3,233,958	-		BWI76_RS15425	0.28	-2.3
3,233,980	+		BWI76_RS15425	0.30	-2.7
3,233,988	-		BWI76_RS15425	0.31	+0.0
3,233,988	-		BWI76_RS15425	0.31	-3.2
3,233,991	+		BWI76_RS15425	0.31	-1.8
3,233,994	-		BWI76_RS15425	0.31	-0.5
3,233,996	+		BWI76_RS15425	0.31	-1.0
3,233,996	+		BWI76_RS15425	0.31	-0.5
3,234,004	-		BWI76_RS15425	0.32	-3.8
3,234,039	+		BWI76_RS15425	0.35	-1.2
3,234,061	+		BWI76_RS15425	0.37	+1.0
3,234,162	+		BWI76_RS15425	0.45	+2.3
3,234,175	-		BWI76_RS15425	0.46	-1.0
3,234,186	-		BWI76_RS15425	0.47	-1.3
3,234,206	+		BWI76_RS15425	0.48	-0.7
3,234,223	+		BWI76_RS15425	0.49	-0.0
3,234,223	+		BWI76_RS15425	0.49	-3.5
3,234,231	+		BWI76_RS15425	0.50	-0.5
3,234,231	+		BWI76_RS15425	0.50	-3.9
3,234,231	+		BWI76_RS15425	0.50	-2.1
3,234,231	+		BWI76_RS15425	0.50	+0.8
3,234,231	+		BWI76_RS15425	0.50	-2.5
3,234,239	-		BWI76_RS15425	0.51	-1.0
3,234,239	-		BWI76_RS15425	0.51	-1.3
3,234,239	-		BWI76_RS15425	0.51	-0.4
3,234,239	-		BWI76_RS15425	0.51	-0.4
3,234,249	-		BWI76_RS15425	0.52	+1.0
3,234,330	-		BWI76_RS15425	0.58	-1.3
3,234,376	+		BWI76_RS15425	0.62	-3.2
3,234,384	-		BWI76_RS15425	0.62	-3.7
3,234,384	-		BWI76_RS15425	0.62	-3.0
3,234,388	+		BWI76_RS15425	0.63	-0.5
3,234,396	+		BWI76_RS15425	0.63	+0.2
3,234,396	-		BWI76_RS15425	0.63	-0.9
3,234,396	-		BWI76_RS15425	0.63	-1.1
3,234,396	-		BWI76_RS15425	0.63	+0.4
3,234,396	-		BWI76_RS15425	0.63	+1.0
3,234,423	+		BWI76_RS15425	0.65	-0.3
3,234,423	+		BWI76_RS15425	0.65	-3.4
3,234,431	-		BWI76_RS15425	0.66	-3.9
3,234,431	-		BWI76_RS15425	0.66	+1.5
3,234,509	+		BWI76_RS15425	0.72	-3.5
3,234,537	+		BWI76_RS15425	0.75	-2.7
3,234,581	+		BWI76_RS15425	0.78	-0.8
3,234,589	-		BWI76_RS15425	0.79	+0.5
3,234,624	+		BWI76_RS15425	0.82	-0.5
3,234,665	+		BWI76_RS15425	0.85	+0.7
3,234,669	-		BWI76_RS15425	0.85	-2.7
3,234,669	-		BWI76_RS15425	0.85	+1.0
3,234,673	-		BWI76_RS15425	0.85	-2.5
3,234,695	+		BWI76_RS15425	0.87	-0.4
3,234,695	+		BWI76_RS15425	0.87	-4.0
3,234,695	+		BWI76_RS15425	0.87	-1.0
3,234,695	+		BWI76_RS15425	0.87	+1.5
3,234,695	+		BWI76_RS15425	0.87	+0.3
3,234,695	+		BWI76_RS15425	0.87	-3.0
3,234,695	+		BWI76_RS15425	0.87	-3.8
3,234,695	+		BWI76_RS15425	0.87	-1.5
3,234,695	+		BWI76_RS15425	0.87	+1.6
3,234,703	-		BWI76_RS15425	0.88	+0.9
3,234,721	+		BWI76_RS15425	0.89	-1.2
3,234,740	-				-0.4
3,234,748	+				-0.8
3,234,752	+				-0.3
3,234,760	-				-4.0
3,234,771	-				+0.0
3,234,773	+				+1.1
3,234,778	+				+0.2
3,234,778	+				+0.5
3,234,781	-				-0.2
3,234,783	+				-3.8
3,234,784	+				-1.1
3,234,791	-				-2.0
3,234,849	+				+0.8
3,234,849	+				+1.6
3,234,854	+				-1.0
3,234,854	+				-0.9
3,234,857	-				-1.7
3,234,857	-				+0.5
3,234,900	+				-1.5
3,234,901	+				+1.1
3,234,901	+				-2.0
3,234,909	-				+3.4
3,234,909	-				+1.2
3,234,909	-				+1.8
3,234,909	-				+0.0
3,235,139	+		BWI76_RS15430	0.20	+0.0
3,235,291	-		BWI76_RS15430	0.34	+1.4
3,235,320	-		BWI76_RS15430	0.37	+0.9