Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14865 and BWI76_RS14870 are separated by 77 nucleotides BWI76_RS14870 and BWI76_RS14875 overlap by 1 nucleotides
BWI76_RS14865: BWI76_RS14865 - ribose ABC transporter permease, at 3,114,241 to 3,115,260
_RS14865
BWI76_RS14870: BWI76_RS14870 - hypothetical protein, at 3,115,338 to 3,116,705
_RS14870
BWI76_RS14875: BWI76_RS14875 - ribokinase-like domain-containing protein, at 3,116,705 to 3,117,649
_RS14875
Position (kb)
3115
3116
3117 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3114.353 kb on + strand, within BWI76_RS14865 at 3114.684 kb on - strand, within BWI76_RS14865 at 3114.741 kb on + strand, within BWI76_RS14865 at 3115.035 kb on - strand, within BWI76_RS14865 at 3115.348 kb on + strand at 3115.473 kb on - strand at 3115.540 kb on + strand, within BWI76_RS14870 at 3116.071 kb on - strand, within BWI76_RS14870 at 3117.068 kb on + strand, within BWI76_RS14875 at 3117.093 kb on - strand, within BWI76_RS14875 at 3117.485 kb on - strand, within BWI76_RS14875 at 3117.487 kb on + strand, within BWI76_RS14875 at 3117.583 kb on + strand at 3117.599 kb on + strand at 3117.636 kb on + strand at 3117.644 kb on - strand at 3117.644 kb on - strand at 3117.681 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 3,114,353 + BWI76_RS14865 0.11 -4.4 3,114,684 - BWI76_RS14865 0.43 +0.0 3,114,741 + BWI76_RS14865 0.49 +0.0 3,115,035 - BWI76_RS14865 0.78 +0.6 3,115,348 + +0.8 3,115,473 - -0.0 3,115,540 + BWI76_RS14870 0.15 +2.0 3,116,071 - BWI76_RS14870 0.54 -4.1 3,117,068 + BWI76_RS14875 0.38 +0.2 3,117,093 - BWI76_RS14875 0.41 -0.2 3,117,485 - BWI76_RS14875 0.83 +1.0 3,117,487 + BWI76_RS14875 0.83 -0.9 3,117,583 + -0.1 3,117,599 + +0.4 3,117,636 + +0.5 3,117,644 - +1.1 3,117,644 - -0.4 3,117,681 - -2.0
Or see this region's nucleotide sequence