Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13800 and BWI76_RS13805 are separated by 255 nucleotides BWI76_RS13805 and BWI76_RS13810 are separated by 200 nucleotides
BWI76_RS13800: BWI76_RS13800 - zinc-dependent alcohol dehydrogenase, at 2,878,494 to 2,879,504
_RS13800
BWI76_RS13805: BWI76_RS13805 - inorganic diphosphatase, at 2,879,760 to 2,880,359
_RS13805
BWI76_RS13810: BWI76_RS13810 - MarR family transcriptional regulator, at 2,880,560 to 2,881,516
_RS13810
Position (kb)
2879
2880
2881 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2878.925 kb on + strand, within BWI76_RS13800 at 2878.968 kb on + strand, within BWI76_RS13800 at 2879.023 kb on + strand, within BWI76_RS13800 at 2879.287 kb on - strand, within BWI76_RS13800 at 2879.342 kb on - strand, within BWI76_RS13800 at 2879.566 kb on - strand at 2880.291 kb on - strand, within BWI76_RS13805 at 2880.291 kb on - strand, within BWI76_RS13805 at 2880.417 kb on + strand at 2880.422 kb on + strand at 2880.450 kb on + strand at 2880.671 kb on + strand, within BWI76_RS13810 at 2880.786 kb on - strand, within BWI76_RS13810 at 2880.800 kb on + strand, within BWI76_RS13810 at 2880.882 kb on - strand, within BWI76_RS13810 at 2880.927 kb on - strand, within BWI76_RS13810 at 2881.072 kb on + strand, within BWI76_RS13810 at 2881.107 kb on - strand, within BWI76_RS13810
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 2,878,925 + BWI76_RS13800 0.43 -2.3 2,878,968 + BWI76_RS13800 0.47 +0.1 2,879,023 + BWI76_RS13800 0.52 +1.6 2,879,287 - BWI76_RS13800 0.78 +1.0 2,879,342 - BWI76_RS13800 0.84 -1.0 2,879,566 - -1.0 2,880,291 - BWI76_RS13805 0.89 +1.0 2,880,291 - BWI76_RS13805 0.89 +2.2 2,880,417 + -0.8 2,880,422 + -2.0 2,880,450 + +0.5 2,880,671 + BWI76_RS13810 0.12 -0.3 2,880,786 - BWI76_RS13810 0.24 +0.9 2,880,800 + BWI76_RS13810 0.25 +0.8 2,880,882 - BWI76_RS13810 0.34 -3.6 2,880,927 - BWI76_RS13810 0.38 +0.3 2,881,072 + BWI76_RS13810 0.54 +0.3 2,881,107 - BWI76_RS13810 0.57 +0.8
Or see this region's nucleotide sequence