Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12885

Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
2,684,032	+		BWI76_RS12880	0.36	+0.4
2,684,088	-		BWI76_RS12880	0.41	-1.3
2,684,176	-		BWI76_RS12880	0.49	-3.1
2,684,239	+		BWI76_RS12880	0.54	-1.3
2,684,241	-		BWI76_RS12880	0.55	-0.9
2,684,249	-		BWI76_RS12880	0.55	+2.7
2,684,289	-		BWI76_RS12880	0.59	+0.7
2,684,289	-		BWI76_RS12880	0.59	-0.9
2,684,289	-		BWI76_RS12880	0.59	+0.5
2,684,303	-		BWI76_RS12880	0.60	-3.5
2,684,303	-		BWI76_RS12880	0.60	-1.7
2,684,308	-		BWI76_RS12880	0.61	-0.3
2,684,308	-				+0.1
2,684,337	+		BWI76_RS12880	0.63	-3.0
2,684,342	-		BWI76_RS12880	0.64	+0.4
2,684,347	-		BWI76_RS12880	0.64	+1.1
2,684,439	-		BWI76_RS12880	0.72	+0.4
2,684,456	-		BWI76_RS12880	0.74	+0.8
2,684,468	-		BWI76_RS12880	0.75	-1.9
2,684,468	-		BWI76_RS12880	0.75	-0.5
2,684,496	+		BWI76_RS12880	0.77	+0.1
2,684,511	-		BWI76_RS12880	0.79	-3.0
2,684,522	+		BWI76_RS12880	0.80	-3.7
2,684,544	-		BWI76_RS12880	0.82	+1.1
2,684,560	-		BWI76_RS12880	0.83	+0.1
2,684,605	+		BWI76_RS12880	0.87	-1.1
2,684,613	-				+0.1
2,684,613	-		BWI76_RS12880	0.88	-1.2
2,684,613	-		BWI76_RS12880	0.88	-1.3
2,684,631	+		BWI76_RS12880	0.89	+1.1
2,684,639	-				+0.1
2,684,639	-				+0.2
2,684,715	+				+3.1
2,684,718	-				-0.5
2,684,723	-				+1.1
2,684,732	+				-0.5
2,684,805	-				-1.3
2,684,805	-				-3.2
2,684,805	-				+0.8
2,684,805	-				-0.9
2,684,805	-				-3.0
2,684,822	-				-0.9
2,684,844	-				-2.8
2,684,989	+				+1.1
2,684,989	+				-0.9
2,684,989	+				-1.7
2,684,989	+				-1.7
2,684,989	+				-0.6
2,684,989	+				+1.1
2,684,989	+				-2.1
2,684,989	+				+0.1
2,684,989	+				-0.5
2,684,989	+				-1.5
2,684,989	+				-3.7
2,684,989	+				-0.5
2,684,989	+				-0.9
2,684,989	+				-2.7
2,684,989	+				-3.1
2,684,989	+				+1.1
2,684,989	+				+2.3
2,684,989	+				-2.7
2,684,992	-				+0.8
2,684,997	-				-0.9
2,684,997	-				-0.2
2,684,997	-				-0.3
2,684,997	-				+1.1
2,684,997	-				+1.3
2,684,997	-				-2.3
2,684,999	+				-0.9
2,685,022	-				+2.4
2,685,069	+		BWI76_RS12885	0.18	-0.5
2,685,105	+		BWI76_RS12885	0.26	+0.1
2,685,106	-		BWI76_RS12885	0.27	-2.8
2,685,240	+		BWI76_RS12885	0.58	-3.1
2,685,327	+		BWI76_RS12885	0.79	+1.1
2,685,329	+		BWI76_RS12885	0.80	-1.3
2,685,337	-		BWI76_RS12885	0.81	-2.3
2,685,355	-		BWI76_RS12885	0.86	-0.4
2,685,383	+				+1.1
2,685,730	+		BWI76_RS12890	0.26	-2.1
2,685,903	+		BWI76_RS12890	0.63	+0.1
2,685,958	-		BWI76_RS12890	0.75	-3.6
2,686,253	-				-2.5
2,686,259	-				+1.1
2,686,259	-				+1.1
2,686,322	-		BWI76_RS12895	0.26	+1.1
2,686,322	-		BWI76_RS12895	0.26	+2.1
2,686,394	+		BWI76_RS12895	0.50	-1.3