Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11900 and BWI76_RS11905 overlap by 4 nucleotides BWI76_RS11905 and BWI76_RS11910 overlap by 6 nucleotides BWI76_RS11910 and BWI76_RS11915 overlap by 1 nucleotides
BWI76_RS11900: BWI76_RS11900 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 2,505,262 to 2,505,852
_RS11900
BWI76_RS11905: BWI76_RS11905 - NAD(P)-dependent oxidoreductase, at 2,505,849 to 2,506,610
_RS11905
BWI76_RS11910: BWI76_RS11910 - hypothetical protein, at 2,506,605 to 2,506,820
_RS11910
BWI76_RS11915: BWI76_RS11915 - protease SohB, at 2,506,820 to 2,507,911
_RS11915
Position (kb) 2506
2507 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 2505.820 kb on + strand at 2506.228 kb on - strand, within BWI76_RS11905 at 2506.821 kb on + strand at 2507.022 kb on + strand, within BWI76_RS11915 at 2507.202 kb on + strand, within BWI76_RS11915 at 2507.405 kb on + strand, within BWI76_RS11915 at 2507.666 kb on - strand, within BWI76_RS11915
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 2,505,820 + -0.9 2,506,228 - BWI76_RS11905 0.50 -3.1 2,506,821 + +0.9 2,507,022 + BWI76_RS11915 0.18 +0.8 2,507,202 + BWI76_RS11915 0.35 -3.1 2,507,405 + BWI76_RS11915 0.54 +0.6 2,507,666 - BWI76_RS11915 0.77 +0.9
Or see this region's nucleotide sequence