Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09425

Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
1,974,411	-		BWI76_RS09420	0.30	-4.7
1,974,785	+				-0.6
1,974,785	+				+0.2
1,974,793	-				+0.6
1,974,857	+				-0.7
1,974,923	+				-0.7
1,975,074	+		BWI76_RS09425	0.14	+0.6
1,975,300	-		BWI76_RS09425	0.27	-1.0
1,975,433	+		BWI76_RS09425	0.35	+1.0
1,975,433	-		BWI76_RS09425	0.35	+0.9
1,975,454	+		BWI76_RS09425	0.36	+0.3
1,975,462	-		BWI76_RS09425	0.37	-0.2
1,975,467	+		BWI76_RS09425	0.37	-0.3
1,975,751	-		BWI76_RS09425	0.54	+0.9
1,975,855	-		BWI76_RS09425	0.60	-0.7
1,975,868	-		BWI76_RS09425	0.61	+1.9
1,975,986	+		BWI76_RS09425	0.68	-0.6
1,976,032	+		BWI76_RS09425	0.70	+1.9
1,976,040	-		BWI76_RS09425	0.71	+0.1
1,976,040	-		BWI76_RS09425	0.71	+0.6
1,976,104	-		BWI76_RS09425	0.75	+2.7
1,976,166	-		BWI76_RS09425	0.78	-5.0
1,976,202	+		BWI76_RS09425	0.81	+0.7
1,976,202	+		BWI76_RS09425	0.81	-2.6
1,976,210	-		BWI76_RS09425	0.81	+0.4
1,976,210	-		BWI76_RS09425	0.81	-0.6
1,976,210	-		BWI76_RS09425	0.81	-1.7
1,976,231	+		BWI76_RS09425	0.82	+4.6
1,976,235	+		BWI76_RS09425	0.83	-0.6
1,976,309	-		BWI76_RS09425	0.87	-1.8
1,976,309	-		BWI76_RS09425	0.87	+1.4
1,976,328	+		BWI76_RS09425	0.88	-0.9
1,976,328	+		BWI76_RS09425	0.88	+0.5
1,976,336	-		BWI76_RS09425	0.88	-0.1
1,976,336	-		BWI76_RS09425	0.88	+0.7
1,976,336	-		BWI76_RS09425	0.88	-0.3
1,976,336	-		BWI76_RS09425	0.88	-3.6
1,976,339	+		BWI76_RS09425	0.89	-1.0
1,976,340	+		BWI76_RS09425	0.89	-3.8
1,976,340	+		BWI76_RS09425	0.89	+0.4
1,976,340	+		BWI76_RS09425	0.89	-1.6
1,976,340	+		BWI76_RS09425	0.89	+0.1
1,976,340	+		BWI76_RS09425	0.89	-4.2
1,976,348	-		BWI76_RS09425	0.89	-0.5
1,976,348	-		BWI76_RS09425	0.89	-0.9
1,976,348	-		BWI76_RS09425	0.89	-0.0
1,976,348	-		BWI76_RS09425	0.89	-0.8
1,976,348	-		BWI76_RS09425	0.89	-2.4
1,976,354	+		BWI76_RS09425	0.90	+1.6
1,976,356	-		BWI76_RS09425	0.90	+1.2
1,976,432	-				-1.0
1,976,457	+				-0.1
1,976,457	+				+0.8
1,976,465	-				-1.5
1,976,465	-				-1.8
1,976,550	+				-1.3
1,976,566	+				+0.5
1,976,597	+				+0.3
1,976,597	+				+0.2
1,976,605	-				-2.3
1,976,616	-				+0.2
1,976,616	-				+0.2
1,976,616	-				+2.0
1,976,626	-				+1.6
1,976,633	+				-0.5
1,976,675	-				+0.0
1,976,677	+				-0.7
1,976,678	+				-0.5
1,976,685	-				+0.9
1,976,742	-				-2.0
1,976,765	+				+3.6
1,976,809	-				-0.4
1,976,819	-				+0.9
1,976,819	-				-0.5
1,976,821	+				+0.2
1,976,821	+				+0.5
1,976,821	+				+1.5
1,976,829	-				+0.3
1,976,876	-		BWI76_RS09430	0.21	+0.2
1,976,885	-		BWI76_RS09430	0.23	-3.6
1,976,888	+		BWI76_RS09430	0.24	+0.9
1,976,901	+		BWI76_RS09430	0.27	+0.4
1,976,901	+		BWI76_RS09430	0.27	+1.3
1,976,901	+		BWI76_RS09430	0.27	+0.6
1,976,901	+		BWI76_RS09430	0.27	+0.7
1,976,902	+		BWI76_RS09430	0.27	-0.3
1,976,909	-		BWI76_RS09430	0.29	-3.8
1,976,909	-		BWI76_RS09430	0.29	-1.8
1,976,921	-		BWI76_RS09430	0.32	+1.0
1,977,094	+		BWI76_RS09430	0.77	+0.5
1,977,094	+		BWI76_RS09430	0.77	-2.8
1,977,096	+		BWI76_RS09430	0.78	-2.0
1,977,096	+		BWI76_RS09430	0.78	-0.4
1,977,102	-		BWI76_RS09430	0.79	-4.5
1,977,162	+				-2.0
1,977,460	+				+0.6
1,977,468	-				+0.6
1,977,468	-				+0.8