Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09405 and BWI76_RS09410 overlap by 38 nucleotides BWI76_RS09410 and BWI76_RS09415 are separated by 74 nucleotides BWI76_RS09415 and BWI76_RS09420 overlap by 38 nucleotides BWI76_RS09420 and BWI76_RS09425 are separated by 264 nucleotides
BWI76_RS09405: BWI76_RS09405 - hypothetical protein, at 1,972,453 to 1,972,632
_RS09405
BWI76_RS09410: BWI76_RS09410 - reverse transcriptase, at 1,972,595 to 1,973,191
_RS09410
BWI76_RS09415: BWI76_RS09415 - IS3 family transposase, at 1,973,266 to 1,974,377
_RS09415
BWI76_RS09420: BWI76_RS09420 - hypothetical protein, at 1,974,340 to 1,974,579
_RS09420
BWI76_RS09425: BWI76_RS09425 - transporter, at 1,974,844 to 1,976,529
_RS09425
Position (kb) 1973
1974
1975 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1972.293 kb on - strand at 1972.329 kb on + strand at 1972.331 kb on + strand at 1972.434 kb on - strand at 1972.434 kb on - strand at 1972.434 kb on - strand at 1972.441 kb on + strand at 1972.458 kb on - strand at 1972.477 kb on + strand, within BWI76_RS09405 at 1972.477 kb on + strand, within BWI76_RS09405 at 1972.509 kb on + strand, within BWI76_RS09405 at 1972.509 kb on + strand, within BWI76_RS09405 at 1972.534 kb on + strand, within BWI76_RS09405 at 1972.544 kb on + strand, within BWI76_RS09405 at 1972.570 kb on + strand, within BWI76_RS09405 at 1972.638 kb on + strand at 1972.646 kb on + strand at 1972.646 kb on - strand at 1972.657 kb on + strand, within BWI76_RS09410 at 1972.665 kb on + strand, within BWI76_RS09410 at 1972.665 kb on + strand, within BWI76_RS09410 at 1972.673 kb on - strand, within BWI76_RS09410 at 1972.691 kb on + strand, within BWI76_RS09410 at 1972.770 kb on - strand, within BWI76_RS09410 at 1972.881 kb on + strand, within BWI76_RS09410 at 1972.974 kb on + strand, within BWI76_RS09410 at 1972.974 kb on + strand, within BWI76_RS09410 at 1973.007 kb on - strand, within BWI76_RS09410 at 1973.019 kb on + strand, within BWI76_RS09410 at 1973.049 kb on + strand, within BWI76_RS09410 at 1973.107 kb on + strand, within BWI76_RS09410 at 1973.161 kb on + strand at 1973.235 kb on - strand at 1974.411 kb on - strand, within BWI76_RS09420 at 1974.785 kb on + strand at 1974.785 kb on + strand at 1974.793 kb on - strand at 1974.857 kb on + strand at 1974.923 kb on + strand at 1975.074 kb on + strand, within BWI76_RS09425 at 1975.300 kb on - strand, within BWI76_RS09425
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 1,972,293 - -1.3 1,972,329 + +0.4 1,972,331 + +1.2 1,972,434 - -2.6 1,972,434 - -1.3 1,972,434 - -3.0 1,972,441 + +0.0 1,972,458 - +0.0 1,972,477 + BWI76_RS09405 0.13 +0.1 1,972,477 + BWI76_RS09405 0.13 +1.8 1,972,509 + BWI76_RS09405 0.31 +0.8 1,972,509 + BWI76_RS09405 0.31 +1.9 1,972,534 + BWI76_RS09405 0.45 +1.1 1,972,544 + BWI76_RS09405 0.51 -0.4 1,972,570 + BWI76_RS09405 0.65 -2.0 1,972,638 + +0.2 1,972,646 + +0.4 1,972,646 - -0.9 1,972,657 + BWI76_RS09410 0.10 -1.8 1,972,665 + BWI76_RS09410 0.12 -0.6 1,972,665 + BWI76_RS09410 0.12 +0.1 1,972,673 - BWI76_RS09410 0.13 +3.3 1,972,691 + BWI76_RS09410 0.16 -0.9 1,972,770 - BWI76_RS09410 0.29 +1.4 1,972,881 + BWI76_RS09410 0.48 -0.4 1,972,974 + BWI76_RS09410 0.63 -1.3 1,972,974 + BWI76_RS09410 0.63 +0.5 1,973,007 - BWI76_RS09410 0.69 -2.3 1,973,019 + BWI76_RS09410 0.71 -2.2 1,973,049 + BWI76_RS09410 0.76 +1.2 1,973,107 + BWI76_RS09410 0.86 -1.0 1,973,161 + +1.0 1,973,235 - -0.5 1,974,411 - BWI76_RS09420 0.30 -4.7 1,974,785 + -0.6 1,974,785 + +0.2 1,974,793 - +0.6 1,974,857 + -0.7 1,974,923 + -0.7 1,975,074 + BWI76_RS09425 0.14 +0.6 1,975,300 - BWI76_RS09425 0.27 -1.0
Or see this region's nucleotide sequence