Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08740 and BWI76_RS08745 are separated by 100 nucleotides BWI76_RS08745 and BWI76_RS08750 are separated by 104 nucleotides BWI76_RS08750 and BWI76_RS08755 are separated by 69 nucleotides
BWI76_RS08740: BWI76_RS08740 - Histidine ammonia-lyase (EC 4.3.1.3) (from data) , at 1,841,384 to 1,842,907
_RS08740
BWI76_RS08745: BWI76_RS08745 - proline-specific permease, at 1,843,008 to 1,844,387
_RS08745
BWI76_RS08750: BWI76_RS08750 - kinase inhibitor, at 1,844,492 to 1,844,968
_RS08750
BWI76_RS08755: BWI76_RS08755 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 1,845,038 to 1,846,327
_RS08755
Position (kb)
1843
1844
1845 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1842.064 kb on - strand, within BWI76_RS08740 at 1842.136 kb on + strand at 1842.263 kb on + strand, within BWI76_RS08740 at 1842.272 kb on - strand, within BWI76_RS08740 at 1842.482 kb on - strand, within BWI76_RS08740 at 1842.597 kb on + strand, within BWI76_RS08740 at 1843.359 kb on - strand, within BWI76_RS08745 at 1843.361 kb on + strand, within BWI76_RS08745 at 1843.748 kb on + strand, within BWI76_RS08745 at 1844.312 kb on + strand at 1844.312 kb on + strand at 1844.867 kb on - strand, within BWI76_RS08750 at 1845.273 kb on - strand, within BWI76_RS08755
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 1,842,064 - BWI76_RS08740 0.45 +0.6 1,842,136 + +1.0 1,842,263 + BWI76_RS08740 0.58 +1.0 1,842,272 - BWI76_RS08740 0.58 -1.6 1,842,482 - BWI76_RS08740 0.72 +0.2 1,842,597 + BWI76_RS08740 0.80 +0.7 1,843,359 - BWI76_RS08745 0.25 -2.0 1,843,361 + BWI76_RS08745 0.26 +0.2 1,843,748 + BWI76_RS08745 0.54 -2.8 1,844,312 + +0.8 1,844,312 + -0.4 1,844,867 - BWI76_RS08750 0.79 +0.4 1,845,273 - BWI76_RS08755 0.18 +0.7
Or see this region's nucleotide sequence