Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04315 and BWI76_RS04320 are separated by 53 nucleotides BWI76_RS04320 and BWI76_RS04325 are separated by 110 nucleotides BWI76_RS04325 and BWI76_RS04330 are separated by 119 nucleotides BWI76_RS04330 and BWI76_RS04335 overlap by 24 nucleotides
BWI76_RS04315: BWI76_RS04315 - Na+/H+ antiporter NhaA, at 889,232 to 890,407
_RS04315
BWI76_RS04320: BWI76_RS04320 - transcriptional activator NhaR, at 890,461 to 891,360
_RS04320
BWI76_RS04325: BWI76_RS04325 - 30S ribosomal protein S20, at 891,471 to 891,734
_RS04325
BWI76_RS04330: BWI76_RS04330 - hypothetical protein, at 891,854 to 892,088
_RS04330
BWI76_RS04335: BWI76_RS04335 - bifunctional riboflavin kinase/FMN adenylyltransferase, at 892,065 to 893,003
_RS04335
Position (kb) 890
891
892 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 889.466 kb on - strand, within BWI76_RS04315 at 889.508 kb on - strand, within BWI76_RS04315 at 889.508 kb on - strand, within BWI76_RS04315 at 889.603 kb on + strand, within BWI76_RS04315 at 889.655 kb on + strand, within BWI76_RS04315 at 889.750 kb on + strand, within BWI76_RS04315 at 889.750 kb on + strand, within BWI76_RS04315 at 889.750 kb on + strand, within BWI76_RS04315 at 889.750 kb on + strand, within BWI76_RS04315 at 889.758 kb on - strand, within BWI76_RS04315 at 889.813 kb on + strand, within BWI76_RS04315 at 889.851 kb on + strand, within BWI76_RS04315 at 889.851 kb on + strand, within BWI76_RS04315 at 889.866 kb on + strand, within BWI76_RS04315 at 889.874 kb on - strand, within BWI76_RS04315 at 890.085 kb on + strand, within BWI76_RS04315 at 890.139 kb on - strand, within BWI76_RS04315 at 890.189 kb on + strand, within BWI76_RS04315 at 890.220 kb on - strand, within BWI76_RS04315 at 890.286 kb on + strand, within BWI76_RS04315 at 890.292 kb on + strand at 890.395 kb on - strand at 890.467 kb on - strand at 890.544 kb on + strand at 890.624 kb on + strand, within BWI76_RS04320 at 890.880 kb on + strand, within BWI76_RS04320 at 890.914 kb on + strand, within BWI76_RS04320 at 891.025 kb on - strand, within BWI76_RS04320 at 891.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 889,466 - BWI76_RS04315 0.20 -1.8 889,508 - BWI76_RS04315 0.23 -0.6 889,508 - BWI76_RS04315 0.23 +1.9 889,603 + BWI76_RS04315 0.32 -2.4 889,655 + BWI76_RS04315 0.36 +0.4 889,750 + BWI76_RS04315 0.44 +0.6 889,750 + BWI76_RS04315 0.44 -0.3 889,750 + BWI76_RS04315 0.44 +2.0 889,750 + BWI76_RS04315 0.44 +0.0 889,758 - BWI76_RS04315 0.45 +0.8 889,813 + BWI76_RS04315 0.49 +1.1 889,851 + BWI76_RS04315 0.53 +1.1 889,851 + BWI76_RS04315 0.53 +0.8 889,866 + BWI76_RS04315 0.54 -0.6 889,874 - BWI76_RS04315 0.55 -4.5 890,085 + BWI76_RS04315 0.73 +1.6 890,139 - BWI76_RS04315 0.77 -0.1 890,189 + BWI76_RS04315 0.81 +2.7 890,220 - BWI76_RS04315 0.84 -3.0 890,286 + BWI76_RS04315 0.90 +0.1 890,292 + +1.0 890,395 - -2.2 890,467 - -1.9 890,544 + -1.8 890,624 + BWI76_RS04320 0.18 -3.2 890,880 + BWI76_RS04320 0.47 +0.4 890,914 + BWI76_RS04320 0.50 +0.1 891,025 - BWI76_RS04320 0.63 -0.4 891,371 + +1.2
Or see this region's nucleotide sequence