Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04300 and BWI76_RS04305 are separated by 87 nucleotides BWI76_RS04305 and BWI76_RS04310 are separated by 327 nucleotides
BWI76_RS04300: BWI76_RS04300 - molecular chaperone DnaK, at 885,079 to 886,995
_RS04300
BWI76_RS04305: BWI76_RS04305 - molecular chaperone DnaJ, at 887,083 to 888,219
_RS04305
BWI76_RS04310: BWI76_RS04310 - hypothetical protein, at 888,547 to 888,726
_RS04310
Position (kb) 887
888
889 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 886.916 kb on + strand at 887.035 kb on + strand at 887.041 kb on + strand at 888.082 kb on + strand, within BWI76_RS04305 at 888.108 kb on + strand at 888.108 kb on + strand at 888.128 kb on + strand at 888.128 kb on + strand at 888.128 kb on + strand at 888.128 kb on + strand at 888.128 kb on + strand at 888.128 kb on + strand at 888.136 kb on - strand at 888.145 kb on + strand at 888.146 kb on - strand at 888.148 kb on + strand at 888.153 kb on + strand at 888.153 kb on + strand at 888.158 kb on - strand at 888.166 kb on - strand at 888.205 kb on + strand at 888.207 kb on + strand at 888.375 kb on + strand at 888.395 kb on + strand at 888.395 kb on + strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.438 kb on - strand at 888.438 kb on - strand at 888.547 kb on - strand at 888.547 kb on - strand at 888.547 kb on - strand at 888.574 kb on - strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.645 kb on - strand, within BWI76_RS04310 at 888.647 kb on + strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.689 kb on + strand, within BWI76_RS04310 at 888.689 kb on + strand, within BWI76_RS04310 at 888.707 kb on - strand, within BWI76_RS04310 at 888.707 kb on - strand, within BWI76_RS04310 at 888.734 kb on + strand at 888.757 kb on - strand at 888.792 kb on + strand at 888.810 kb on + strand at 888.811 kb on - strand at 888.818 kb on - strand at 888.841 kb on + strand at 888.841 kb on + strand at 888.849 kb on - strand at 888.849 kb on - strand at 888.849 kb on - strand at 888.854 kb on - strand at 888.854 kb on - strand at 888.856 kb on - strand at 888.950 kb on + strand at 888.950 kb on + strand at 889.089 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 886,916 + -2.6 887,035 + +1.0 887,041 + -0.1 888,082 + BWI76_RS04305 0.88 -4.1 888,108 + -3.6 888,108 + -1.1 888,128 + -0.6 888,128 + -1.5 888,128 + -4.4 888,128 + -2.9 888,128 + -0.4 888,128 + +0.2 888,136 - +0.8 888,145 + -0.1 888,146 - +0.0 888,148 + -2.6 888,153 + -3.5 888,153 + -4.4 888,158 - -3.1 888,166 - -3.8 888,205 + -0.6 888,207 + -1.7 888,375 + +1.0 888,395 + +0.0 888,395 + +1.0 888,403 - -0.8 888,403 - -3.7 888,403 - +1.0 888,403 - -3.1 888,403 - +0.7 888,403 - -0.9 888,438 - -3.2 888,438 - +0.2 888,547 - -0.5 888,547 - +1.4 888,547 - +2.4 888,574 - BWI76_RS04310 0.15 +2.9 888,642 + BWI76_RS04310 0.53 -0.9 888,642 + BWI76_RS04310 0.53 -0.6 888,642 + BWI76_RS04310 0.53 +0.6 888,642 + BWI76_RS04310 0.53 +1.1 888,642 + BWI76_RS04310 0.53 -1.0 888,645 - BWI76_RS04310 0.54 -1.6 888,647 + BWI76_RS04310 0.56 -1.8 888,650 - BWI76_RS04310 0.57 +0.5 888,650 - BWI76_RS04310 0.57 +1.3 888,650 - BWI76_RS04310 0.57 +1.8 888,650 - BWI76_RS04310 0.57 -1.8 888,650 - BWI76_RS04310 0.57 -0.9 888,689 + BWI76_RS04310 0.79 -0.7 888,689 + BWI76_RS04310 0.79 +1.5 888,707 - BWI76_RS04310 0.89 +1.0 888,707 - BWI76_RS04310 0.89 -3.6 888,734 + -0.1 888,757 - -0.6 888,792 + +1.5 888,810 + -4.1 888,811 - +1.0 888,818 - -1.5 888,841 + -4.1 888,841 + -0.5 888,849 - -0.0 888,849 - +1.0 888,849 - -0.6 888,854 - -0.2 888,854 - -0.2 888,856 - -1.3 888,950 + -4.8 888,950 + -3.6 889,089 + -0.5
Or see this region's nucleotide sequence