Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03495 and BWI76_RS03500 are separated by 857 nucleotides BWI76_RS03500 and BWI76_RS03505 are separated by 40 nucleotides
BWI76_RS03495: BWI76_RS03495 - 5S ribosomal RNA, at 723,001 to 723,116
_RS03495
BWI76_RS03500: BWI76_RS03500 - hypothetical protein, at 723,974 to 724,291
_RS03500
BWI76_RS03505: BWI76_RS03505 - membrane protein, at 724,332 to 725,456
_RS03505
Position (kb) 723
724
725 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 723.126 kb on + strand at 723.196 kb on - strand at 723.242 kb on - strand at 723.362 kb on + strand at 723.378 kb on - strand at 723.380 kb on - strand at 723.383 kb on + strand at 723.733 kb on + strand at 723.734 kb on + strand at 723.738 kb on + strand at 723.738 kb on + strand at 723.746 kb on - strand at 723.746 kb on - strand at 723.769 kb on + strand at 723.769 kb on - strand at 723.778 kb on - strand at 723.791 kb on + strand at 723.791 kb on + strand at 723.791 kb on + strand at 723.791 kb on + strand at 723.791 kb on + strand at 723.791 kb on + strand at 723.792 kb on + strand at 723.792 kb on + strand at 723.792 kb on + strand at 723.792 kb on + strand at 723.792 kb on + strand at 723.793 kb on + strand at 723.793 kb on + strand at 723.799 kb on - strand at 723.799 kb on - strand at 723.799 kb on - strand at 723.799 kb on - strand at 723.800 kb on - strand at 723.800 kb on - strand at 723.800 kb on - strand at 723.800 kb on - strand at 723.822 kb on + strand at 723.830 kb on - strand at 723.830 kb on - strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.832 kb on + strand at 723.840 kb on - strand at 723.840 kb on - strand at 723.840 kb on - strand at 723.840 kb on - strand at 723.840 kb on - strand at 723.857 kb on + strand at 723.865 kb on - strand at 723.892 kb on + strand at 723.893 kb on - strand at 723.904 kb on + strand at 723.911 kb on - strand at 723.911 kb on - strand at 723.912 kb on - strand at 723.912 kb on - strand at 723.912 kb on - strand at 723.917 kb on - strand at 723.918 kb on - strand at 723.930 kb on + strand at 723.961 kb on - strand at 723.993 kb on + strand at 723.993 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 723.998 kb on + strand at 724.001 kb on - strand at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.006 kb on - strand, within BWI76_RS03500 at 724.030 kb on + strand, within BWI76_RS03500 at 724.031 kb on + strand at 724.031 kb on + strand, within BWI76_RS03500 at 724.039 kb on - strand, within BWI76_RS03500 at 724.039 kb on - strand, within BWI76_RS03500 at 724.039 kb on - strand, within BWI76_RS03500 at 724.039 kb on - strand, within BWI76_RS03500 at 724.039 kb on - strand, within BWI76_RS03500 at 724.040 kb on - strand, within BWI76_RS03500 at 724.045 kb on + strand, within BWI76_RS03500 at 724.045 kb on + strand, within BWI76_RS03500 at 724.046 kb on + strand, within BWI76_RS03500 at 724.054 kb on + strand, within BWI76_RS03500 at 724.062 kb on - strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.064 kb on + strand, within BWI76_RS03500 at 724.072 kb on - strand, within BWI76_RS03500 at 724.091 kb on + strand, within BWI76_RS03500 at 724.096 kb on - strand, within BWI76_RS03500 at 724.106 kb on - strand, within BWI76_RS03500 at 724.106 kb on - strand, within BWI76_RS03500 at 724.247 kb on + strand, within BWI76_RS03500 at 724.252 kb on + strand, within BWI76_RS03500 at 724.255 kb on - strand, within BWI76_RS03500 at 724.255 kb on - strand, within BWI76_RS03500 at 724.260 kb on - strand at 724.260 kb on - strand at 724.260 kb on - strand at 724.318 kb on + strand at 724.331 kb on - strand at 724.401 kb on - strand at 724.471 kb on - strand, within BWI76_RS03505 at 724.514 kb on - strand, within BWI76_RS03505 at 724.582 kb on + strand, within BWI76_RS03505 at 724.727 kb on - strand, within BWI76_RS03505 at 724.733 kb on + strand, within BWI76_RS03505 at 724.733 kb on + strand, within BWI76_RS03505 at 725.078 kb on - strand, within BWI76_RS03505 at 725.095 kb on + strand, within BWI76_RS03505 at 725.103 kb on - strand, within BWI76_RS03505 at 725.233 kb on + strand, within BWI76_RS03505
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 723,126 + -0.1 723,196 - -2.9 723,242 - -0.8 723,362 + -0.5 723,378 - -0.5 723,380 - -1.6 723,383 + -1.0 723,733 + -3.5 723,734 + -1.8 723,738 + +0.0 723,738 + +1.2 723,746 - -0.6 723,746 - +0.5 723,769 + -1.6 723,769 - -0.5 723,778 - -1.7 723,791 + -1.8 723,791 + +1.0 723,791 + -1.8 723,791 + -1.3 723,791 + +2.0 723,791 + +2.2 723,792 + +1.2 723,792 + +1.0 723,792 + +0.2 723,792 + +1.2 723,792 + -0.5 723,793 + -4.4 723,793 + +3.0 723,799 - +0.0 723,799 - +0.1 723,799 - -4.2 723,799 - +1.7 723,800 - -1.4 723,800 - +0.9 723,800 - -3.2 723,800 - -2.3 723,822 + +1.0 723,830 - -1.3 723,830 - -2.0 723,832 + -0.0 723,832 + +0.2 723,832 + +0.5 723,832 + -0.6 723,832 + +1.1 723,832 + -0.5 723,832 + -2.2 723,832 + +2.0 723,840 - +1.0 723,840 - +1.0 723,840 - +1.4 723,840 - -3.2 723,840 - +0.7 723,857 + -0.6 723,865 - +0.0 723,892 + -0.6 723,893 - -0.2 723,904 + -0.4 723,911 - -0.5 723,911 - +0.2 723,912 - -3.1 723,912 - +0.2 723,912 - -0.1 723,917 - -2.2 723,918 - -4.1 723,930 + -1.8 723,961 - -1.0 723,993 + +0.8 723,993 + +0.5 723,998 + +1.0 723,998 + -1.2 723,998 + -1.3 723,998 + +0.0 723,998 + -3.2 723,998 + +0.7 723,998 + -4.4 723,998 + +2.9 723,998 + -2.8 723,998 + -1.5 723,998 + +0.4 723,998 + +0.1 723,998 + +1.0 723,998 + -2.9 723,998 + -0.6 723,998 + +0.4 723,998 + -0.7 723,998 + -0.7 724,001 - -3.8 724,006 - BWI76_RS03500 0.10 -0.4 724,006 - BWI76_RS03500 0.10 -0.6 724,006 - BWI76_RS03500 0.10 +0.0 724,006 - BWI76_RS03500 0.10 -3.2 724,006 - BWI76_RS03500 0.10 +0.1 724,006 - BWI76_RS03500 0.10 -4.1 724,006 - BWI76_RS03500 0.10 +0.5 724,006 - BWI76_RS03500 0.10 -0.1 724,006 - BWI76_RS03500 0.10 -1.8 724,006 - BWI76_RS03500 0.10 -3.3 724,006 - BWI76_RS03500 0.10 -1.7 724,006 - BWI76_RS03500 0.10 -1.6 724,006 - BWI76_RS03500 0.10 +1.1 724,030 + BWI76_RS03500 0.18 -0.4 724,031 + +0.0 724,031 + BWI76_RS03500 0.18 +1.6 724,039 - BWI76_RS03500 0.20 -1.7 724,039 - BWI76_RS03500 0.20 -1.0 724,039 - BWI76_RS03500 0.20 +1.0 724,039 - BWI76_RS03500 0.20 -1.4 724,039 - BWI76_RS03500 0.20 -1.6 724,040 - BWI76_RS03500 0.21 -1.8 724,045 + BWI76_RS03500 0.22 -0.0 724,045 + BWI76_RS03500 0.22 +1.8 724,046 + BWI76_RS03500 0.23 +3.6 724,054 + BWI76_RS03500 0.25 +0.5 724,062 - BWI76_RS03500 0.28 -1.3 724,064 + BWI76_RS03500 0.28 -2.7 724,064 + BWI76_RS03500 0.28 -3.2 724,064 + BWI76_RS03500 0.28 -3.1 724,064 + BWI76_RS03500 0.28 -1.2 724,064 + BWI76_RS03500 0.28 -0.5 724,064 + BWI76_RS03500 0.28 +1.3 724,064 + BWI76_RS03500 0.28 -0.8 724,064 + BWI76_RS03500 0.28 -0.7 724,072 - BWI76_RS03500 0.31 -3.6 724,091 + BWI76_RS03500 0.37 -1.0 724,096 - BWI76_RS03500 0.38 -1.3 724,106 - BWI76_RS03500 0.42 -2.7 724,106 - BWI76_RS03500 0.42 -3.6 724,247 + BWI76_RS03500 0.86 -1.3 724,252 + BWI76_RS03500 0.87 -0.2 724,255 - BWI76_RS03500 0.88 -2.8 724,255 - BWI76_RS03500 0.88 -1.1 724,260 - -0.6 724,260 - -3.4 724,260 - -2.9 724,318 + +1.5 724,331 - +1.1 724,401 - +1.5 724,471 - BWI76_RS03505 0.12 -3.2 724,514 - BWI76_RS03505 0.16 +0.5 724,582 + BWI76_RS03505 0.22 +0.5 724,727 - BWI76_RS03505 0.35 +0.1 724,733 + BWI76_RS03505 0.36 -1.0 724,733 + BWI76_RS03505 0.36 +1.4 725,078 - BWI76_RS03505 0.66 -1.0 725,095 + BWI76_RS03505 0.68 +1.4 725,103 - BWI76_RS03505 0.69 +0.8 725,233 + BWI76_RS03505 0.80 +0.4
Or see this region's nucleotide sequence