Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02815 and BWI76_RS02820 are separated by 175 nucleotides BWI76_RS02820 and BWI76_RS02825 are separated by 64 nucleotides BWI76_RS02825 and BWI76_RS02830 are separated by 162 nucleotides
BWI76_RS02815: BWI76_RS02815 - fructose-bisphosphatase class I, at 574,848 to 575,846
_RS02815
BWI76_RS02820: BWI76_RS02820 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 576,022 to 577,395
_RS02820
BWI76_RS02825: BWI76_RS02825 - putative acyltransferase domain protein, at 577,460 to 578,005
_RS02825
BWI76_RS02830: BWI76_RS02830 - DUF4432 domain-containing protein, at 578,168 to 579,376
_RS02830
Position (kb) 576
577
578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 575.069 kb on + strand, within BWI76_RS02815 at 575.351 kb on - strand, within BWI76_RS02815 at 575.631 kb on - strand, within BWI76_RS02815 at 575.769 kb on + strand at 575.865 kb on - strand at 575.922 kb on + strand at 575.928 kb on - strand at 575.979 kb on + strand at 576.100 kb on - strand at 576.100 kb on - strand at 576.128 kb on - strand at 576.546 kb on + strand, within BWI76_RS02820 at 576.731 kb on + strand, within BWI76_RS02820 at 576.739 kb on - strand, within BWI76_RS02820 at 576.792 kb on + strand, within BWI76_RS02820 at 576.909 kb on - strand, within BWI76_RS02820 at 577.147 kb on - strand, within BWI76_RS02820 at 577.269 kb on + strand at 577.396 kb on + strand at 577.522 kb on + strand, within BWI76_RS02825 at 577.528 kb on - strand, within BWI76_RS02825 at 577.552 kb on + strand, within BWI76_RS02825 at 577.560 kb on - strand, within BWI76_RS02825 at 577.634 kb on + strand, within BWI76_RS02825 at 577.911 kb on + strand, within BWI76_RS02825 at 578.213 kb on + strand at 578.264 kb on + strand at 578.272 kb on + strand at 578.272 kb on - strand at 578.277 kb on - strand at 578.282 kb on - strand at 578.307 kb on + strand, within BWI76_RS02830 at 578.358 kb on - strand, within BWI76_RS02830
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 575,069 + BWI76_RS02815 0.22 +1.1 575,351 - BWI76_RS02815 0.50 +2.5 575,631 - BWI76_RS02815 0.78 +2.1 575,769 + +1.6 575,865 - -3.5 575,922 + +0.2 575,928 - +0.5 575,979 + +0.0 576,100 - -0.1 576,100 - +3.6 576,128 - -1.3 576,546 + BWI76_RS02820 0.38 -3.2 576,731 + BWI76_RS02820 0.52 +1.3 576,739 - BWI76_RS02820 0.52 +4.5 576,792 + BWI76_RS02820 0.56 +1.1 576,909 - BWI76_RS02820 0.65 +1.1 577,147 - BWI76_RS02820 0.82 +1.1 577,269 + +0.1 577,396 + +0.5 577,522 + BWI76_RS02825 0.11 -0.8 577,528 - BWI76_RS02825 0.12 -0.5 577,552 + BWI76_RS02825 0.17 +1.0 577,560 - BWI76_RS02825 0.18 +2.5 577,634 + BWI76_RS02825 0.32 +1.0 577,911 + BWI76_RS02825 0.83 -0.1 578,213 + +1.6 578,264 + +0.0 578,272 + -0.4 578,272 - +0.3 578,277 - +1.1 578,282 - +0.3 578,307 + BWI76_RS02830 0.11 +0.2 578,358 - BWI76_RS02830 0.16 +1.9
Or see this region's nucleotide sequence