Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02045 and BWI76_RS02050 are separated by 103 nucleotides BWI76_RS02050 and BWI76_RS02055 overlap by 8 nucleotides
BWI76_RS02045: BWI76_RS02045 - LysR family transcriptional regulator, at 421,398 to 422,294
_RS02045
BWI76_RS02050: BWI76_RS02050 - CidA/LrgA family protein, at 422,398 to 422,808
_RS02050
BWI76_RS02055: BWI76_RS02055 - murein hydrolase effector protein LrgB, at 422,801 to 423,490
_RS02055
Position (kb) 422
423 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 421.403 kb on - strand at 421.438 kb on + strand at 421.477 kb on - strand at 421.478 kb on - strand at 421.526 kb on - strand, within BWI76_RS02045 at 421.540 kb on - strand, within BWI76_RS02045 at 421.626 kb on - strand, within BWI76_RS02045 at 421.950 kb on + strand, within BWI76_RS02045 at 422.000 kb on + strand, within BWI76_RS02045 at 422.148 kb on + strand, within BWI76_RS02045 at 422.161 kb on - strand, within BWI76_RS02045 at 422.308 kb on + strand at 422.316 kb on - strand at 422.316 kb on - strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.355 kb on + strand at 422.356 kb on + strand at 422.356 kb on + strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.363 kb on - strand at 422.368 kb on - strand at 422.415 kb on - strand at 422.418 kb on + strand at 422.429 kb on + strand at 422.429 kb on + strand at 422.437 kb on - strand at 422.461 kb on + strand, within BWI76_RS02050 at 422.496 kb on + strand, within BWI76_RS02050 at 422.782 kb on + strand at 422.792 kb on + strand at 422.792 kb on + strand at 422.792 kb on + strand at 422.816 kb on - strand at 422.978 kb on - strand, within BWI76_RS02055 at 423.081 kb on + strand, within BWI76_RS02055 at 423.182 kb on + strand, within BWI76_RS02055 at 423.271 kb on - strand, within BWI76_RS02055 at 423.339 kb on - strand, within BWI76_RS02055 at 423.352 kb on - strand, within BWI76_RS02055 at 423.384 kb on + strand, within BWI76_RS02055 at 423.384 kb on + strand, within BWI76_RS02055 at 423.392 kb on - strand, within BWI76_RS02055 at 423.396 kb on + strand, within BWI76_RS02055 at 423.467 kb on + strand at 423.467 kb on + strand at 423.474 kb on + strand at 423.474 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.484 kb on + strand at 423.487 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.492 kb on - strand at 423.493 kb on + strand at 423.500 kb on + strand at 423.503 kb on + strand at 423.511 kb on - strand at 423.522 kb on + strand at 423.525 kb on - strand at 423.525 kb on - strand at 423.525 kb on - strand at 423.525 kb on - strand at 423.530 kb on - strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.559 kb on + strand at 423.567 kb on - strand at 423.567 kb on - strand at 423.567 kb on - strand at 423.567 kb on - strand at 423.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 421,403 - +1.0 421,438 + +1.0 421,477 - +0.2 421,478 - +1.8 421,526 - BWI76_RS02045 0.14 +1.0 421,540 - BWI76_RS02045 0.16 +0.8 421,626 - BWI76_RS02045 0.25 -2.1 421,950 + BWI76_RS02045 0.62 -1.5 422,000 + BWI76_RS02045 0.67 +1.0 422,148 + BWI76_RS02045 0.84 +1.1 422,161 - BWI76_RS02045 0.85 -0.9 422,308 + -0.4 422,316 - +1.4 422,316 - +1.9 422,355 + -1.2 422,355 + -0.2 422,355 + +0.8 422,355 + -2.6 422,355 + +0.0 422,355 + +0.4 422,355 + -2.5 422,356 + +0.3 422,356 + +0.2 422,363 - +2.9 422,363 - +0.7 422,363 - +0.4 422,363 - +0.7 422,363 - -0.5 422,363 - +0.5 422,363 - -0.1 422,363 - -0.5 422,368 - -0.6 422,415 - -1.3 422,418 + +0.0 422,429 + -5.0 422,429 + -0.7 422,437 - -2.0 422,461 + BWI76_RS02050 0.15 -3.4 422,496 + BWI76_RS02050 0.24 -2.2 422,782 + +0.6 422,792 + +0.0 422,792 + -1.2 422,792 + +0.2 422,816 - +0.9 422,978 - BWI76_RS02055 0.26 -2.7 423,081 + BWI76_RS02055 0.41 +4.2 423,182 + BWI76_RS02055 0.55 +0.5 423,271 - BWI76_RS02055 0.68 +1.4 423,339 - BWI76_RS02055 0.78 +2.5 423,352 - BWI76_RS02055 0.80 -1.3 423,384 + BWI76_RS02055 0.84 +0.1 423,384 + BWI76_RS02055 0.84 -1.8 423,392 - BWI76_RS02055 0.86 +2.8 423,396 + BWI76_RS02055 0.86 -0.3 423,467 + +0.8 423,467 + -1.8 423,474 + -0.5 423,474 + -0.8 423,484 + +0.3 423,484 + +0.0 423,484 + -2.1 423,484 + +2.2 423,484 + +1.0 423,484 + +0.8 423,487 - -1.3 423,492 - +4.8 423,492 - -4.0 423,492 - +0.9 423,492 - -0.3 423,492 - -1.5 423,492 - +0.6 423,492 - +1.2 423,492 - +0.2 423,492 - -0.5 423,492 - -0.1 423,492 - -0.9 423,492 - +1.7 423,493 + -1.8 423,500 + -2.4 423,503 + +1.5 423,511 - +0.0 423,522 + -2.4 423,525 - +2.0 423,525 - -2.9 423,525 - -4.0 423,525 - -0.2 423,530 - +0.7 423,559 + -0.2 423,559 + +0.6 423,559 + +0.9 423,559 + +2.0 423,559 + +1.0 423,559 + +0.0 423,559 + +0.5 423,567 - -1.4 423,567 - +0.4 423,567 - -2.4 423,567 - -0.9 423,621 + -1.5
Or see this region's nucleotide sequence