Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02015 and BWI76_RS02020 are separated by 146 nucleotides BWI76_RS02020 and BWI76_RS02025 are separated by 185 nucleotides
BWI76_RS02015: BWI76_RS02015 - NCS2 family permease, at 412,912 to 414,261
_RS02015
BWI76_RS02020: BWI76_RS02020 - Na+/H+ antiporter, at 414,408 to 416,054
_RS02020
BWI76_RS02025: BWI76_RS02025 - LysR family transcriptional regulator, at 416,240 to 417,127
_RS02025
Position (kb) 414
415
416
417 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 413.769 kb on + strand at 413.813 kb on - strand, within BWI76_RS02015 at 413.874 kb on - strand, within BWI76_RS02015 at 413.935 kb on - strand, within BWI76_RS02015 at 414.012 kb on - strand, within BWI76_RS02015 at 414.098 kb on + strand, within BWI76_RS02015 at 414.143 kb on + strand at 414.151 kb on - strand at 414.191 kb on + strand at 414.199 kb on - strand at 414.201 kb on + strand at 414.209 kb on - strand at 414.209 kb on - strand at 414.335 kb on + strand at 414.347 kb on + strand at 414.439 kb on - strand at 414.439 kb on - strand at 414.507 kb on - strand at 414.525 kb on + strand at 414.528 kb on - strand at 414.530 kb on + strand at 414.533 kb on - strand at 414.565 kb on + strand at 414.602 kb on + strand, within BWI76_RS02020 at 414.727 kb on - strand, within BWI76_RS02020 at 414.798 kb on - strand, within BWI76_RS02020 at 414.808 kb on - strand, within BWI76_RS02020 at 414.808 kb on - strand, within BWI76_RS02020 at 415.019 kb on - strand, within BWI76_RS02020 at 415.074 kb on + strand, within BWI76_RS02020 at 415.099 kb on + strand, within BWI76_RS02020 at 415.099 kb on + strand, within BWI76_RS02020 at 415.107 kb on - strand, within BWI76_RS02020 at 415.166 kb on - strand, within BWI76_RS02020 at 415.417 kb on - strand, within BWI76_RS02020 at 415.417 kb on - strand, within BWI76_RS02020 at 415.428 kb on - strand, within BWI76_RS02020 at 415.593 kb on + strand, within BWI76_RS02020 at 415.695 kb on - strand, within BWI76_RS02020 at 415.715 kb on - strand, within BWI76_RS02020 at 415.828 kb on + strand at 415.836 kb on - strand at 415.848 kb on - strand, within BWI76_RS02020 at 415.937 kb on - strand at 415.950 kb on + strand at 415.952 kb on + strand at 415.958 kb on - strand at 415.969 kb on + strand at 415.995 kb on + strand at 416.014 kb on + strand at 416.014 kb on + strand at 416.014 kb on + strand at 416.022 kb on - strand at 416.024 kb on + strand at 416.032 kb on - strand at 416.048 kb on + strand at 416.048 kb on + strand at 416.070 kb on + strand at 416.078 kb on - strand at 416.083 kb on - strand at 416.083 kb on - strand at 416.173 kb on + strand at 416.173 kb on + strand at 416.181 kb on - strand at 416.181 kb on - strand at 416.181 kb on - strand at 416.181 kb on - strand at 416.183 kb on + strand at 416.183 kb on - strand at 416.185 kb on + strand at 416.185 kb on + strand at 416.191 kb on - strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.227 kb on - strand at 416.237 kb on - strand at 416.237 kb on - strand at 416.400 kb on - strand, within BWI76_RS02025 at 416.448 kb on + strand, within BWI76_RS02025 at 416.520 kb on + strand, within BWI76_RS02025 at 416.590 kb on + strand, within BWI76_RS02025 at 416.680 kb on + strand, within BWI76_RS02025 at 416.736 kb on - strand, within BWI76_RS02025 at 416.838 kb on + strand, within BWI76_RS02025 at 416.851 kb on - strand, within BWI76_RS02025 at 416.851 kb on - strand at 416.851 kb on - strand, within BWI76_RS02025 at 416.851 kb on - strand, within BWI76_RS02025 at 416.901 kb on + strand, within BWI76_RS02025 at 416.905 kb on + strand, within BWI76_RS02025 at 416.909 kb on - strand at 416.914 kb on - strand, within BWI76_RS02025 at 416.915 kb on + strand, within BWI76_RS02025 at 416.925 kb on + strand, within BWI76_RS02025 at 416.938 kb on + strand, within BWI76_RS02025 at 416.949 kb on + strand, within BWI76_RS02025 at 416.953 kb on + strand, within BWI76_RS02025 at 416.953 kb on + strand, within BWI76_RS02025 at 416.953 kb on + strand, within BWI76_RS02025 at 416.955 kb on - strand, within BWI76_RS02025 at 416.958 kb on + strand, within BWI76_RS02025 at 416.959 kb on + strand, within BWI76_RS02025 at 416.959 kb on - strand, within BWI76_RS02025 at 416.961 kb on - strand, within BWI76_RS02025 at 416.961 kb on - strand, within BWI76_RS02025 at 416.961 kb on - strand, within BWI76_RS02025 at 416.964 kb on + strand, within BWI76_RS02025 at 416.964 kb on + strand, within BWI76_RS02025 at 416.966 kb on - strand, within BWI76_RS02025 at 416.966 kb on - strand, within BWI76_RS02025 at 416.967 kb on - strand, within BWI76_RS02025 at 416.972 kb on - strand, within BWI76_RS02025 at 416.975 kb on + strand, within BWI76_RS02025 at 416.990 kb on + strand, within BWI76_RS02025 at 416.998 kb on - strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.032 kb on + strand, within BWI76_RS02025 at 417.033 kb on + strand, within BWI76_RS02025 at 417.036 kb on - strand, within BWI76_RS02025 at 417.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 413,769 + +1.1 413,813 - BWI76_RS02015 0.67 +1.8 413,874 - BWI76_RS02015 0.71 +0.7 413,935 - BWI76_RS02015 0.76 -0.5 414,012 - BWI76_RS02015 0.81 +0.3 414,098 + BWI76_RS02015 0.88 -2.3 414,143 + +1.2 414,151 - -3.1 414,191 + -0.1 414,199 - +0.2 414,201 + -1.5 414,209 - -0.8 414,209 - +1.1 414,335 + +0.1 414,347 + +2.0 414,439 - +1.2 414,439 - +0.2 414,507 - -0.1 414,525 + -0.5 414,528 - -0.1 414,530 + +0.7 414,533 - +0.3 414,565 + -2.9 414,602 + BWI76_RS02020 0.12 -3.9 414,727 - BWI76_RS02020 0.19 +1.0 414,798 - BWI76_RS02020 0.24 -0.4 414,808 - BWI76_RS02020 0.24 +1.8 414,808 - BWI76_RS02020 0.24 +0.7 415,019 - BWI76_RS02020 0.37 +0.4 415,074 + BWI76_RS02020 0.40 +0.8 415,099 + BWI76_RS02020 0.42 +2.6 415,099 + BWI76_RS02020 0.42 +0.7 415,107 - BWI76_RS02020 0.42 +0.9 415,166 - BWI76_RS02020 0.46 +2.1 415,417 - BWI76_RS02020 0.61 +1.1 415,417 - BWI76_RS02020 0.61 +0.2 415,428 - BWI76_RS02020 0.62 +1.0 415,593 + BWI76_RS02020 0.72 +0.7 415,695 - BWI76_RS02020 0.78 -2.6 415,715 - BWI76_RS02020 0.79 +1.5 415,828 + -2.1 415,836 - +0.1 415,848 - BWI76_RS02020 0.87 +0.9 415,937 - -0.3 415,950 + +1.2 415,952 + -1.3 415,958 - +1.7 415,969 + -0.3 415,995 + -3.2 416,014 + -0.5 416,014 + +1.7 416,014 + -2.1 416,022 - +0.5 416,024 + +0.5 416,032 - -3.8 416,048 + +0.3 416,048 + -0.3 416,070 + -0.9 416,078 - -0.5 416,083 - -0.0 416,083 - -0.8 416,173 + -0.2 416,173 + +0.1 416,181 - -1.1 416,181 - +0.1 416,181 - +0.4 416,181 - -1.3 416,183 + +0.9 416,183 - -0.2 416,185 + +0.0 416,185 + -0.7 416,191 - -3.6 416,193 + -1.1 416,193 + +1.6 416,193 + -2.4 416,193 + -0.9 416,193 + +1.9 416,193 + -0.5 416,193 + -2.5 416,201 - +0.8 416,201 - -0.2 416,201 - +1.9 416,201 - +0.1 416,201 - -1.5 416,201 - -1.1 416,201 - -0.6 416,201 - -0.9 416,201 - -5.1 416,201 - -0.7 416,201 - -1.5 416,201 - -1.3 416,201 - +0.2 416,201 - -3.3 416,201 - -3.9 416,201 - +0.1 416,227 - -1.8 416,237 - -2.6 416,237 - -1.0 416,400 - BWI76_RS02025 0.18 -1.6 416,448 + BWI76_RS02025 0.23 +1.1 416,520 + BWI76_RS02025 0.32 -2.8 416,590 + BWI76_RS02025 0.39 -2.4 416,680 + BWI76_RS02025 0.50 -3.9 416,736 - BWI76_RS02025 0.56 -3.9 416,838 + BWI76_RS02025 0.67 +0.9 416,851 - BWI76_RS02025 0.69 +0.2 416,851 - +0.1 416,851 - BWI76_RS02025 0.69 -2.4 416,851 - BWI76_RS02025 0.69 +1.1 416,901 + BWI76_RS02025 0.74 +1.1 416,905 + BWI76_RS02025 0.75 -0.0 416,909 - -0.9 416,914 - BWI76_RS02025 0.76 +1.1 416,915 + BWI76_RS02025 0.76 -1.8 416,925 + BWI76_RS02025 0.77 -2.1 416,938 + BWI76_RS02025 0.79 -0.2 416,949 + BWI76_RS02025 0.80 +0.1 416,953 + BWI76_RS02025 0.80 +1.1 416,953 + BWI76_RS02025 0.80 +0.1 416,953 + BWI76_RS02025 0.80 +1.1 416,955 - BWI76_RS02025 0.81 -0.5 416,958 + BWI76_RS02025 0.81 -2.5 416,959 + BWI76_RS02025 0.81 +0.1 416,959 - BWI76_RS02025 0.81 -1.5 416,961 - BWI76_RS02025 0.81 -1.4 416,961 - BWI76_RS02025 0.81 -0.9 416,961 - BWI76_RS02025 0.81 -2.9 416,964 + BWI76_RS02025 0.82 -4.5 416,964 + BWI76_RS02025 0.82 +1.1 416,966 - BWI76_RS02025 0.82 -3.6 416,966 - BWI76_RS02025 0.82 -1.3 416,967 - BWI76_RS02025 0.82 +0.6 416,972 - BWI76_RS02025 0.82 -0.5 416,975 + BWI76_RS02025 0.83 -3.5 416,990 + BWI76_RS02025 0.84 +1.1 416,998 - BWI76_RS02025 0.85 +0.1 417,023 + BWI76_RS02025 0.88 -0.5 417,023 + BWI76_RS02025 0.88 -2.3 417,023 + BWI76_RS02025 0.88 -0.5 417,023 + BWI76_RS02025 0.88 -4.1 417,023 + BWI76_RS02025 0.88 +0.1 417,023 + BWI76_RS02025 0.88 +1.4 417,023 + BWI76_RS02025 0.88 -3.2 417,023 + BWI76_RS02025 0.88 +1.7 417,031 - BWI76_RS02025 0.89 -0.5 417,031 - BWI76_RS02025 0.89 -1.9 417,031 - BWI76_RS02025 0.89 -1.5 417,031 - BWI76_RS02025 0.89 -0.5 417,031 - BWI76_RS02025 0.89 -0.0 417,031 - BWI76_RS02025 0.89 -2.5 417,032 + BWI76_RS02025 0.89 +1.1 417,033 + BWI76_RS02025 0.89 -0.1 417,036 - BWI76_RS02025 0.90 -1.3 417,042 + -1.9
Or see this region's nucleotide sequence