Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01845 and BWI76_RS01850 are separated by 107 nucleotides BWI76_RS01850 and BWI76_RS01855 are separated by 188 nucleotides BWI76_RS01855 and BWI76_RS01860 are separated by 12 nucleotides
BWI76_RS01845: BWI76_RS01845 - maltoporin, at 376,068 to 377,354
_RS01845
BWI76_RS01850: BWI76_RS01850 - maltose operon protein MalM, at 377,462 to 378,394
_RS01850
BWI76_RS01855: BWI76_RS01855 - chorismate lyase, at 378,583 to 379,080
_RS01855
BWI76_RS01860: BWI76_RS01860 - 4-hydroxybenzoate octaprenyltransferase, at 379,093 to 379,962
_RS01860
Position (kb) 377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 376.547 kb on - strand, within BWI76_RS01845 at 376.708 kb on + strand, within BWI76_RS01845 at 376.708 kb on + strand, within BWI76_RS01845 at 376.733 kb on - strand, within BWI76_RS01845 at 376.786 kb on + strand, within BWI76_RS01845 at 376.932 kb on + strand, within BWI76_RS01845 at 377.030 kb on + strand, within BWI76_RS01845 at 377.195 kb on - strand, within BWI76_RS01845 at 377.487 kb on + strand at 377.608 kb on + strand, within BWI76_RS01850 at 377.782 kb on - strand, within BWI76_RS01850 at 377.998 kb on + strand, within BWI76_RS01850 at 377.998 kb on + strand, within BWI76_RS01850 at 377.998 kb on + strand, within BWI76_RS01850 at 378.006 kb on - strand, within BWI76_RS01850 at 378.093 kb on + strand, within BWI76_RS01850 at 378.108 kb on + strand, within BWI76_RS01850 at 378.383 kb on - strand at 378.398 kb on + strand at 378.427 kb on + strand at 378.427 kb on + strand at 378.435 kb on - strand at 378.887 kb on + strand, within BWI76_RS01855 at 378.895 kb on - strand, within BWI76_RS01855 at 379.069 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 376,547 - BWI76_RS01845 0.37 -3.6 376,708 + BWI76_RS01845 0.50 +1.0 376,708 + BWI76_RS01845 0.50 -1.7 376,733 - BWI76_RS01845 0.52 -2.5 376,786 + BWI76_RS01845 0.56 -2.1 376,932 + BWI76_RS01845 0.67 +0.4 377,030 + BWI76_RS01845 0.75 -0.5 377,195 - BWI76_RS01845 0.88 +0.1 377,487 + -2.3 377,608 + BWI76_RS01850 0.16 +0.3 377,782 - BWI76_RS01850 0.34 +2.0 377,998 + BWI76_RS01850 0.57 +1.5 377,998 + BWI76_RS01850 0.57 -0.1 377,998 + BWI76_RS01850 0.57 -0.5 378,006 - BWI76_RS01850 0.58 +0.5 378,093 + BWI76_RS01850 0.68 +0.0 378,108 + BWI76_RS01850 0.69 +0.6 378,383 - +0.7 378,398 + +1.0 378,427 + -2.1 378,427 + +0.7 378,435 - -0.4 378,887 + BWI76_RS01855 0.61 -0.4 378,895 - BWI76_RS01855 0.63 +2.3 379,069 + +1.0
Or see this region's nucleotide sequence