Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01805 and BWI76_RS01810 are separated by 8 nucleotides BWI76_RS01810 and BWI76_RS01815 are separated by 144 nucleotides BWI76_RS01815 and BWI76_RS01820 are separated by 191 nucleotides
BWI76_RS01805: BWI76_RS01805 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 368,942 to 369,397
_RS01805
BWI76_RS01810: BWI76_RS01810 - N-acetyltransferase, at 369,406 to 369,915
_RS01810
BWI76_RS01815: BWI76_RS01815 - phosphate-starvation-inducible protein PsiE, at 370,060 to 370,470
_RS01815
BWI76_RS01820: BWI76_RS01820 - maltose ABC transporter, permease component 2 (MalG) <small>(from data)</small>, at 370,662 to 371,552
_RS01820
Position (kb) 370
371 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 369.126 kb on + strand, within BWI76_RS01805 at 369.134 kb on - strand, within BWI76_RS01805 at 369.314 kb on + strand, within BWI76_RS01805 at 369.322 kb on + strand, within BWI76_RS01805 at 369.388 kb on + strand at 369.388 kb on + strand at 369.388 kb on + strand at 369.503 kb on - strand, within BWI76_RS01810 at 369.569 kb on - strand, within BWI76_RS01810 at 369.599 kb on + strand, within BWI76_RS01810 at 369.637 kb on - strand, within BWI76_RS01810 at 369.689 kb on - strand, within BWI76_RS01810 at 369.809 kb on - strand, within BWI76_RS01810 at 369.841 kb on - strand, within BWI76_RS01810 at 369.884 kb on - strand at 370.020 kb on + strand at 370.044 kb on + strand at 370.210 kb on - strand, within BWI76_RS01815 at 370.322 kb on + strand, within BWI76_RS01815 at 370.398 kb on - strand, within BWI76_RS01815 at 370.592 kb on + strand at 370.722 kb on + strand at 370.741 kb on + strand at 370.820 kb on + strand, within BWI76_RS01820 at 370.820 kb on + strand, within BWI76_RS01820 at 370.828 kb on - strand, within BWI76_RS01820 at 370.828 kb on - strand, within BWI76_RS01820 at 370.835 kb on - strand, within BWI76_RS01820 at 370.859 kb on + strand, within BWI76_RS01820 at 370.937 kb on - strand, within BWI76_RS01820 at 371.116 kb on - strand, within BWI76_RS01820 at 371.182 kb on + strand, within BWI76_RS01820 at 371.182 kb on + strand, within BWI76_RS01820 at 371.239 kb on + strand, within BWI76_RS01820
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 369,126 + BWI76_RS01805 0.40 +1.6 369,134 - BWI76_RS01805 0.42 +2.0 369,314 + BWI76_RS01805 0.82 -0.5 369,322 + BWI76_RS01805 0.83 +0.2 369,388 + +1.6 369,388 + +0.5 369,388 + +0.3 369,503 - BWI76_RS01810 0.19 +0.4 369,569 - BWI76_RS01810 0.32 +0.6 369,599 + BWI76_RS01810 0.38 -3.1 369,637 - BWI76_RS01810 0.45 -0.3 369,689 - BWI76_RS01810 0.55 -1.1 369,809 - BWI76_RS01810 0.79 -0.6 369,841 - BWI76_RS01810 0.85 +0.7 369,884 - -0.3 370,020 + +1.0 370,044 + -1.5 370,210 - BWI76_RS01815 0.36 -1.3 370,322 + BWI76_RS01815 0.64 -0.0 370,398 - BWI76_RS01815 0.82 -1.7 370,592 + +1.2 370,722 + +0.2 370,741 + +1.0 370,820 + BWI76_RS01820 0.18 -0.9 370,820 + BWI76_RS01820 0.18 +0.6 370,828 - BWI76_RS01820 0.19 +0.3 370,828 - BWI76_RS01820 0.19 -0.3 370,835 - BWI76_RS01820 0.19 -0.9 370,859 + BWI76_RS01820 0.22 +2.1 370,937 - BWI76_RS01820 0.31 +0.4 371,116 - BWI76_RS01820 0.51 +0.7 371,182 + BWI76_RS01820 0.58 +0.5 371,182 + BWI76_RS01820 0.58 +1.4 371,239 + BWI76_RS01820 0.65 +1.0
Or see this region's nucleotide sequence