Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00560

Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
112,188	+		BWI76_RS00545	0.73	+0.7
112,191	-		BWI76_RS00545	0.74	+1.2
112,209	-		BWI76_RS00545	0.76	+0.9
112,229	-		BWI76_RS00545	0.78	+1.6
112,229	-		BWI76_RS00545	0.78	+2.6
112,241	-		BWI76_RS00545	0.80	+1.3
112,245	+		BWI76_RS00545	0.80	-0.9
112,253	-		BWI76_RS00545	0.81	-3.5
112,253	-		BWI76_RS00545	0.81	-0.1
112,256	+		BWI76_RS00545	0.81	-0.6
112,270	-		BWI76_RS00545	0.83	-0.5
112,274	+		BWI76_RS00545	0.84	+1.0
112,296	-		BWI76_RS00545	0.86	+0.2
112,296	-		BWI76_RS00545	0.86	+1.6
112,296	-		BWI76_RS00545	0.86	+4.3
112,302	+		BWI76_RS00545	0.87	-1.5
112,306	-		BWI76_RS00545	0.87	+1.8
112,306	-		BWI76_RS00545	0.87	-0.9
112,326	+		BWI76_RS00545	0.90	-1.7
112,326	+				+1.1
112,326	+		BWI76_RS00545	0.90	+1.0
112,326	+		BWI76_RS00545	0.90	-3.4
112,326	+		BWI76_RS00545	0.90	+1.1
112,326	+		BWI76_RS00545	0.90	+0.4
112,334	-				+0.8
112,334	-				-0.1
112,334	-				+1.9
112,375	+				-1.7
112,383	-				+0.1
112,383	-				+0.6
112,383	-				+1.1
112,403	+				-2.6
112,427	-				+1.1
112,442	-				+1.4
112,442	-				+0.6
112,444	+				-0.2
112,444	+				+0.2
112,444	+				-0.8
112,444	+				-2.3
112,447	+				+0.7
112,447	-				+0.6
112,449	+				-2.0
112,452	+				+0.3
112,455	-				-0.2
112,457	-				-0.4
112,459	+				-0.3
112,460	-				+0.1
112,471	+				+1.1
112,471	+				+1.8
112,471	+				-2.8
112,479	-				+0.4
112,479	-				-0.9
112,481	+				+1.0
112,512	-		BWI76_RS00550	0.16	-0.1
112,514	+		BWI76_RS00550	0.17	-0.3
112,519	+		BWI76_RS00550	0.19	-1.4
112,519	+		BWI76_RS00550	0.19	+0.1
112,522	-		BWI76_RS00550	0.20	+0.5
112,524	+		BWI76_RS00550	0.20	+0.6
112,532	-		BWI76_RS00550	0.23	+0.1
112,534	+		BWI76_RS00550	0.24	-0.1
112,536	+		BWI76_RS00550	0.25	-0.6
112,536	+		BWI76_RS00550	0.25	-2.3
112,536	+		BWI76_RS00550	0.25	+0.5
112,536	+		BWI76_RS00550	0.25	+1.4
112,536	+		BWI76_RS00550	0.25	+0.3
112,536	+		BWI76_RS00550	0.25	+0.5
112,544	-		BWI76_RS00550	0.28	+0.4
112,546	-		BWI76_RS00550	0.29	-3.2
112,563	+		BWI76_RS00550	0.35	+0.5
112,574	+		BWI76_RS00550	0.39	+0.6
112,577	+		BWI76_RS00550	0.40	+0.2
112,577	+		BWI76_RS00550	0.40	+0.2
112,582	+		BWI76_RS00550	0.42	-1.2
112,590	-		BWI76_RS00550	0.45	+1.0
112,590	-		BWI76_RS00550	0.45	-3.0
112,590	-		BWI76_RS00550	0.45	-0.5
112,613	+		BWI76_RS00550	0.53	+0.5
112,614	+		BWI76_RS00550	0.54	-3.5
112,614	+		BWI76_RS00550	0.54	+2.1
112,614	+		BWI76_RS00550	0.54	+0.4
112,622	-		BWI76_RS00550	0.57	-0.5
112,622	-		BWI76_RS00550	0.57	+1.9
112,627	+		BWI76_RS00550	0.59	+0.6
112,632	+		BWI76_RS00550	0.60	-3.1
112,632	+		BWI76_RS00550	0.60	+0.4
112,632	+		BWI76_RS00550	0.60	+1.7
112,635	-		BWI76_RS00550	0.61	-1.3
112,635	-		BWI76_RS00550	0.61	-0.2
112,635	-		BWI76_RS00550	0.61	+2.1
112,652	+		BWI76_RS00550	0.68	+0.7
112,657	+		BWI76_RS00550	0.70	-3.3
112,675	+		BWI76_RS00550	0.76	+1.3
112,675	+		BWI76_RS00550	0.76	+0.4
112,675	+				+1.1
112,677	+		BWI76_RS00550	0.77	-1.1
112,677	+		BWI76_RS00550	0.77	-0.3
112,690	+		BWI76_RS00550	0.82	+0.1
112,690	+		BWI76_RS00550	0.82	+1.0
112,698	+		BWI76_RS00550	0.85	+1.1
112,698	+		BWI76_RS00550	0.85	-1.7
112,706	+		BWI76_RS00550	0.88	-0.3
112,706	-		BWI76_RS00550	0.88	-0.9
112,768	+				-3.6
112,768	+				-0.1
112,768	+				-2.7
112,768	+				-0.8
112,768	+				-0.0
112,772	-				+0.1
112,776	-				+1.1
112,779	+				+0.2
112,794	+		BWI76_RS00555	0.11	+0.7
112,799	+		BWI76_RS00555	0.12	+0.5
112,802	-		BWI76_RS00555	0.12	-3.6
112,802	-		BWI76_RS00555	0.12	-3.0
112,802	-		BWI76_RS00555	0.12	-0.7
112,802	-		BWI76_RS00555	0.12	-0.6
112,810	-				-0.5
112,810	-		BWI76_RS00555	0.14	-1.1
112,810	-		BWI76_RS00555	0.14	-0.4
112,820	-		BWI76_RS00555	0.16	-2.5
112,856	+		BWI76_RS00555	0.25	-1.9
112,864	-		BWI76_RS00555	0.26	-2.8
112,864	-		BWI76_RS00555	0.26	+0.6
112,906	-		BWI76_RS00555	0.36	+0.5
112,906	-		BWI76_RS00555	0.36	+0.5
112,956	+		BWI76_RS00555	0.47	-1.5
112,983	+		BWI76_RS00555	0.54	+2.5
112,983	+		BWI76_RS00555	0.54	-2.0
112,983	+		BWI76_RS00555	0.54	-3.0
112,990	-		BWI76_RS00555	0.55	-1.7
112,991	-		BWI76_RS00555	0.55	-0.1
112,991	-		BWI76_RS00555	0.55	+1.1
112,991	-		BWI76_RS00555	0.55	-3.8
112,991	-		BWI76_RS00555	0.55	-0.9
112,991	-		BWI76_RS00555	0.55	+0.4
112,991	-		BWI76_RS00555	0.55	-3.1
112,991	-		BWI76_RS00555	0.55	-3.7
113,073	-		BWI76_RS00555	0.74	+0.7
113,073	-		BWI76_RS00555	0.74	-0.9
113,079	+		BWI76_RS00555	0.76	-0.2
113,110	-		BWI76_RS00555	0.83	+0.8
113,157	+				-0.4
113,157	+				-0.5
113,165	-				+1.0
113,165	-				+1.4
113,168	-				-0.5
113,179	+				+0.7
113,179	+				+1.6
113,187	-				+1.3
113,193	+				-1.0
113,309	+		BWI76_RS00560	0.23	-3.9
113,346	+		BWI76_RS00560	0.30	-1.1
113,540	+		BWI76_RS00560	0.65	-0.4
113,590	-		BWI76_RS00560	0.74	-2.3
113,686	+				+1.0
113,702	-				-0.7
113,970	+		BWI76_RS00565	0.44	-1.1
113,970	+		BWI76_RS00565	0.44	+1.1
113,996	+		BWI76_RS00565	0.52	-0.5
114,014	-		BWI76_RS00565	0.58	+1.2
114,032	+		BWI76_RS00565	0.63	-0.9
114,255	+		BWI76_RS00570	0.16	+0.1
114,255	+		BWI76_RS00570	0.16	-0.4
114,448	-		BWI76_RS00570	0.45	+1.4
114,461	+		BWI76_RS00570	0.47	+1.5
114,539	+		BWI76_RS00570	0.59	+0.8
114,547	-		BWI76_RS00570	0.60	-0.5
114,547	-		BWI76_RS00570	0.60	+0.1
114,547	-		BWI76_RS00570	0.60	+1.0
114,646	-		BWI76_RS00570	0.75	+0.4
114,679	-		BWI76_RS00570	0.80	+0.5
114,704	-		BWI76_RS00570	0.84	-0.5
114,718	+		BWI76_RS00570	0.86	+0.3
114,726	-		BWI76_RS00570	0.87	-1.2